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Advances and Applications in Bioinformatics and Chemistry
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- Volume 15, 2022 (1)
- Volume 14, 2021 (9)
- Volume 13, 2020 (3)
- Volume 12, 2019 (3)
- Volume 11, 2018 (1)
- Volume 10, 2017 (7)
- Volume 9, 2016 (1)
- Volume 8, 2015 (5)
- Volume 7, 2014 (5)
- Volume 6, 2013 (6)
- Volume 5, 2012 (4)
- Volume 4, 2011 (5)
- Volume 3, 2010 (12)
- Volume 2, 2009 (10)
- Volume 1, 2008 (9)
Journal Articles:
- 81 records -
Binding Analysis Using Accelerated Molecular Dynamics Simulations and Future Perspectives
Pawnikar S, Bhattarai A, Wang J, Miao Y
Advances and Applications in Bioinformatics and Chemistry 2022, 15:1-19
Published Date: 6 January 2022
Antibacterial, Docking, DFT and ADMET Properties Evaluation of Chalcone-Sulfonamide Derivatives Prepared Using ZnO Nanoparticle Catalysis
Weyesa A, Eswaramoorthy R, Melaku Y, Mulugeta E
Advances and Applications in Bioinformatics and Chemistry 2021, 14:133-144
Published Date: 11 December 2021
Antimicrobial Activity, in silico Molecular Docking, ADMET and DFT Analysis of Secondary Metabolites from Roots of Three Ethiopian Medicinal Plants
Anza M, Endale M, Cardona L, Cortes D, Eswaramoorthy R, Zueco J, Rico H, Trelis M, Abarca B
Advances and Applications in Bioinformatics and Chemistry 2021, 14:117-132
Published Date: 20 August 2021
Bio-Mechanism Inhibitory Prediction of β-Sitosterol from Kemangi (Ocimum basilicum L.) as an Inhibitor of MurA Enzyme of Oral Bacteria: In vitro and in silico Study
Evangelina IA, Herdiyati Y, Laviana A, Rikmasari R, Zubaedah C, Anisah, Kurnia D
Advances and Applications in Bioinformatics and Chemistry 2021, 14:103-115
Published Date: 23 June 2021
O-GlcNAcylation Prediction: An Unattained Objective
Mauri T, Menu-Bouaouiche L, Bardor M, Lefebvre T, Lensink MF, Brysbaert G
Advances and Applications in Bioinformatics and Chemistry 2021, 14:87-102
Published Date: 8 June 2021
Chemoinformatic Analysis of Psychotropic and Antihistaminic Drugs in the Light of Experimental Anti-SARS-CoV-2 Activities
Villoutreix BO, Krishnamoorthy R, Tamouza R, Leboyer M, Beaune P
Advances and Applications in Bioinformatics and Chemistry 2021, 14:71-85
Published Date: 12 April 2021
Enhanced Understanding of Molecular Interactions and Function Underlying Pain Processes Through Networks of Transcript Isoforms, Genes, and Gene Families
Zhang P, Southey BR, Sweedler JV, Pradhan A, Rodriguez-Zas SL
Advances and Applications in Bioinformatics and Chemistry 2021, 14:49-69
Published Date: 18 February 2021
An Overview of Current Uses and Future Opportunities for Computer-Assisted Design of Vaccines for Neglected Tropical Diseases
Robleda-Castillo R, Ros-Lucas A, Martinez-Peinado N, Alonso-Padilla J
Advances and Applications in Bioinformatics and Chemistry 2021, 14:25-47
Published Date: 15 February 2021
In silico Molecular Docking, DFT Analysis and ADMET Studies of Carbazole Alkaloid and Coumarins from Roots of Clausena anisata: A Potent Inhibitor for Quorum Sensing
Eswaramoorthy R, Hailekiros H, Kedir F, Endale M
Advances and Applications in Bioinformatics and Chemistry 2021, 14:13-24
Published Date: 5 February 2021
Transcriptome Analysis of Pseudomonas aeruginosa Biofilm Following the Exposure to Malaysian Stingless Bee Honey
Seder N, Abu Bakar MH, Abu Rayyan WS
Advances and Applications in Bioinformatics and Chemistry 2021, 14:1-11
Published Date: 14 January 2021
Developing a Kinase-Specific Target Selection Method Using a Structure-Based Machine Learning Approach
Afanasyeva A, Nagao C, Mizuguchi K
Advances and Applications in Bioinformatics and Chemistry 2020, 13:27-40
Published Date: 2 December 2020
Current Challenges and Opportunities in Designing Protein–Protein Interaction Targeted Drugs
Shin WH, Kumazawa K, Imai K, Hirokawa T, Kihara D
Advances and Applications in Bioinformatics and Chemistry 2020, 13:11-25
Published Date: 12 November 2020
Structural and Molecular Docking Analytical Studies of the Predicted Ligand Binding Sites of Cadherin-1 in Cancer Prognostics
Bakare OO, Fadaka AO, Keyster M, Pretorius A
Advances and Applications in Bioinformatics and Chemistry 2020, 13:1-9
Published Date: 28 July 2020
Cytotoxicity Of Chalcone Of Eugenia aquea Burm F. Leaves Against T47D Breast Cancer Cell Lines And Its Prediction As An Estrogen Receptor Antagonist Based On Pharmacophore-Molecular Dynamics Simulation
Muchtaridi M, Yusuf M, Syahidah HN, Subarnas A, Zamri A, Bryant SD, Langer T
Advances and Applications in Bioinformatics and Chemistry 2019, 12:33-43
Published Date: 6 November 2019
Computational evaluation of natural compounds as potential inhibitors of human PEPCK-M: an alternative for lung cancer therapy
Baptista LPR, Sinatti VVC, Da Silva JHM, Dardenne LE, Guimarães AC
Advances and Applications in Bioinformatics and Chemistry 2019, 12:15-32
Published Date: 7 August 2019
Molecular dynamics study to improve the substrate adsorption of Saccharomycopsis fibuligera R64 alpha-amylase by designing a new surface binding site
Baroroh U, Yusuf M, Rachman SD, Ishmayana S, Hasan K, Subroto T
Advances and Applications in Bioinformatics and Chemistry 2019, 12:1-13
Published Date: 7 June 2019
Computational analysis of ligand-receptor interactions in wild-type and mutant erythropoietin complexes
Pekas NJ, Newton SS
Advances and Applications in Bioinformatics and Chemistry 2018, 11:1-8
Published Date: 15 October 2018
Structural and functional characterization of the Helicobacter pylori cytidine 5'-monophosphate-pseudaminic acid synthase PseF: molecular insight into substrate recognition and catalysis mechanism
Wahid SUH
Advances and Applications in Bioinformatics and Chemistry 2017, 10:79-88
Published Date: 6 October 2017
Computational tool for optimizing the essential oils utilization in inhibiting the bacterial growth
El-Attar NE, Awad WA
Advances and Applications in Bioinformatics and Chemistry 2017, 10:65-78
Published Date: 5 September 2017
Prioritizing single-nucleotide polymorphisms and variants associated with clinical mastitis
Suravajhala P, Benso A
Advances and Applications in Bioinformatics and Chemistry 2017, 10:57-64
Published Date: 12 June 2017
The identification of protein domains that mediate functional interactions between Rab-GTPases and RabGAPs using 3D protein modeling
Davie JJ, Faitar SL
Advances and Applications in Bioinformatics and Chemistry 2017, 10:47-56
Published Date: 10 April 2017
Genetic interrelations in the actinomycin biosynthetic gene clusters of Streptomyces antibioticus IMRU 3720 and Streptomyces chrysomallus ATCC11523, producers of actinomycin X and actinomycin C
Crnovčić I, Rückert C, Semsary S, Lang M, Kalinowski J, Keller U
Advances and Applications in Bioinformatics and Chemistry 2017, 10:29-46
Published Date: 7 April 2017
In silico-based vaccine design against Ebola virus glycoprotein
Dash R, Das R, Junaid M, Akash MFC, Islam A, Hosen SMZ
Advances and Applications in Bioinformatics and Chemistry 2017, 10:11-28
Published Date: 21 March 2017
Mapping circulating serum miRNAs to their immune-related target mRNAs
Nosirov B, Billaud J, Vandenbon A, Diez D, Wijaya E, Ishii KJ, Teraguchi S, Standley DM
Advances and Applications in Bioinformatics and Chemistry 2017, 10:1-9
Published Date: 2 February 2017
Molecular docking as a popular tool in drug design, an in silico travel
de Ruyck J, Brysbaert G, Blossey R, Lensink MF
Advances and Applications in Bioinformatics and Chemistry 2016, 9:1-11
Published Date: 24 June 2016
Identification of potential drug targets by subtractive genome analysis of Escherichia coli O157:H7: an in silico approach
Mondal SI, Ferdous S, Jewel NA, Akter A, Mahmud Z, Islam MM, Afrin T, Karim N
Advances and Applications in Bioinformatics and Chemistry 2015, 8:49-63
Published Date: 8 December 2015
Molecular dynamics simulations: advances and applications
Hospital A, Goñi JR, Orozco M, Gelpí JL
Advances and Applications in Bioinformatics and Chemistry 2015, 8:37-47
Published Date: 19 November 2015
Parallel computing in genomic research: advances and applications
Ocaña K, de Oliveira D
Advances and Applications in Bioinformatics and Chemistry 2015, 8:23-35
Published Date: 13 November 2015
Tools for visualization and analysis of molecular networks, pathways, and -omics data
Villaveces JM, Koti P, Habermann BH
Advances and Applications in Bioinformatics and Chemistry 2015, 8:11-22
Published Date: 4 June 2015
Identification of highly conserved regions in L-segment of Crimean–Congo hemorrhagic fever virus and immunoinformatic prediction about potential novel vaccine
Oany AR, Ahmad SAI, Hossain MU, Jyoti TP
Advances and Applications in Bioinformatics and Chemistry 2015, 8:1-10
Published Date: 8 January 2015
Identification and analysis of potential targets in Streptococcus sanguinis using computer aided protein data analysis
Chowdhury MRH, Bhuiyan MIK, Saha A, Mosleh IM, Mondol S, Ahmed CMS
Advances and Applications in Bioinformatics and Chemistry 2014, 7:45-54
Published Date: 25 November 2014
The hemagglutinin of the influenza A(H1N1)pdm09 is mutating towards stability
Castelán-Vega JA, Magaña-Hernández A, Jiménez-Alberto A, Ribas-Aparicio RM
Advances and Applications in Bioinformatics and Chemistry 2014, 7:37-44
Published Date: 3 October 2014
In silico predictive model to determine vector-mediated transport properties for the blood–brain barrier choline transporter
Shityakov S, Förster C
Advances and Applications in Bioinformatics and Chemistry 2014, 7:23-36
Published Date: 2 September 2014
Three-dimensional quantitative structure–activity relationship and docking studies in a series of anthocyanin derivatives as cytochrome P450 3A4 inhibitors
Shityakov S, Puskás I, Roewer N, Förster C, Broscheit J
Advances and Applications in Bioinformatics and Chemistry 2014, 7:11-21
Published Date: 25 March 2014
In silico structure-based screening of versatile P-glycoprotein inhibitors using polynomial empirical scoring functions
Shityakov S, Förster C
Advances and Applications in Bioinformatics and Chemistry 2014, 7:1-9
Published Date: 24 March 2014
Hypergeometric analysis of tiling-array and sequence data: detection and interpretation of peaks
Taskesen E, Hoogeboezem R, Delwel R, Reinders MJT
Advances and Applications in Bioinformatics and Chemistry 2013, 6:55-62
Published Date: 25 October 2013
Design of multiligand inhibitors for the swine flu H1N1 neuraminidase binding site
Narayanan MM, Nair CB, Sanjeeva SK, Rao PVS, Pullela PK, Barrow CJ
Advances and Applications in Bioinformatics and Chemistry 2013, 6:47-53
Published Date: 19 August 2013
Antigenic heterogeneity of capsid protein VP1 in foot-and-mouth disease virus (FMDV) serotype Asia1
Alam SM, Amin R, Rahman MZ, Hossain MA, Sultana M
Advances and Applications in Bioinformatics and Chemistry 2013, 6:37-46
Published Date: 13 August 2013
Approaches to the detection of recessive effects using next generation sequencing data from outbred populations
Curtis, D
Advances and Applications in Bioinformatics and Chemistry 2013, 6:29-35
Published Date: 11 June 2013
Inferences on the biochemical and environmental regulation of universal stress proteins from Schistosomiasis parasites
Mbah AN, Mahmud O, Awofolu OR, Isokpehi RD
Advances and Applications in Bioinformatics and Chemistry 2013, 6:15-27
Published Date: 10 May 2013
Genetic and chemical knockdown: a complementary strategy for evaluating an anti-infective target
Ramachandran V, Singh R, Yang X, Tunduguru R, Mohapatra S, Khandelwal S, Patel S, Datta S
Advances and Applications in Bioinformatics and Chemistry 2013, 6:1-13
Published Date: 7 February 2013
Contact-based ligand-clustering approach for the identification of active compounds in virtual screening
Mantsyzov AB, Bouvier G, Evrard-Todeschi N, Bertho G
Advances and Applications in Bioinformatics and Chemistry 2012, 5:61-79
Published Date: 6 September 2012
A novel biclustering approach with iterative optimization to analyze gene expression data
Sutheeworapong S, Ota M, Ohta H, Kinoshita K
Advances and Applications in Bioinformatics and Chemistry 2012, 5:23-59
Published Date: 7 September 2012
B-Pred, a structure based B-cell epitopes prediction server
Giacò L, Amicosante M, Fraziano M, Gherardini PF, Ausiello G, Helmer-Citterich M, Colizzi V, Cabibbo A
Advances and Applications in Bioinformatics and Chemistry 2012, 5:11-21
Published Date: 25 July 2012
A rapid method for combined analysis of common and rare variants at the level of a region, gene, or pathway
Curtis D
Advances and Applications in Bioinformatics and Chemistry 2012, 5:1-9
Published Date: 24 July 2012
Role of Shwachman-Bodian-Diamond syndrome protein in translation machinery and cell chemotaxis: a comparative genomics approach
Vasieva O
Advances and Applications in Bioinformatics and Chemistry 2011, 4:43-50
Published Date: 21 September 2011
FDR-FET: an optimizing gene set enrichment analysis method
Rui-Ru Ji, Karl-Heinz Ott, Roumyana Yordanova, et al
Advances and Applications in Bioinformatics and Chemistry 2011, 4:37-42
Published Date: 15 March 2011
Affinity of estrogens for human progesterone receptor A and B monomers and risk of breast cancer: a comparative molecular modeling study
Tarique N Hasan, Leena Grace B, Tariq A Masoodi, et al
Advances and Applications in Bioinformatics and Chemistry 2011, 4:29-36
Published Date: 8 March 2011
LifePrint: a novel k-tuple distance method for construction of phylogenetic trees
Fabián Reyes-Prieto, Adda J García-Chéquer, Hueman Jaimes-Díaz, et al
Advances and Applications in Bioinformatics and Chemistry 2011, 4:13-27
Published Date: 20 January 2011
MODENA: a multi-objective RNA inverse folding
Akito Taneda
Advances and Applications in Bioinformatics and Chemistry 2011, 4:1-12
Published Date: 22 December 2010
SNP analysis of follistatin gene associated with polycystic ovarian syndrome
Palanisamy Panneerselvam, Kanakarajan Sivakumari, Ponmani Jayaprakash, et al
Advances and Applications in Bioinformatics and Chemistry 2010, 3:111-119
Published Date: 13 December 2010
A kinetic platform for in silico modeling of the metabolic dynamics in Escherichia coli
Aditya Barve, Anvita Gupta, Suresh M Solapure, et al
Advances and Applications in Bioinformatics and Chemistry 2010, 3:97-110
Published Date: 7 December 2010
Construction of random perfect phylogeny matrix
Mehdi Sadeghi, Hamid Pezeshk, Changiz Eslahchi, et al
Advances and Applications in Bioinformatics and Chemistry 2010, 3:89-96
Published Date: 16 November 2010
Efficient algorithms for multidimensional global optimization in genetic mapping of complex traits
Kajsa Ljungberg, Kateryna Mishchenko, Sverker Holmgren
Advances and Applications in Bioinformatics and Chemistry 2010, 3:75-88
Published Date: 28 October 2010
An unsupervised strategy for biomedical image segmentation
Roberto Rodríguez, Rubén Hernández
Advances and Applications in Bioinformatics and Chemistry 2010, 3:67-73
Published Date: 13 September 2010
Modeling of thermodynamic and physico-chemical properties of coumarins bioactivity against Candida albicans using a Levenberg–Marquardt neural network
Seyyedeh Soghra Mousavi, Hanieh Bokharaie, Shadi Rahimi, et al
Advances and Applications in Bioinformatics and Chemistry 2010, 3:59-66
Published Date: 13 August 2010
Molecular biocoding of insulin
Lutvo Kuric
Advances and Applications in Bioinformatics and Chemistry 2010, 3:45-58
Published Date: 28 July 2010
Pharmacogenomics of drug efficacy in the interferon treatment of chronic hepatitis C using classification algorithms
Wan-Sheng Ke, Yuchi Hwang, Eugene Lin
Advances and Applications in Bioinformatics and Chemistry 2010, 3:39-44
Published Date: 15 June 2010
Simultaneous use of solution, solid-state NMR and X-ray crystallography to study the conformational landscape of the Crh protein during oligomerization and crystallization
Benjamin Bardiaux, Adrien Favier, Manuel Etzkorn, et al
Advances and Applications in Bioinformatics and Chemistry 2010, 3:25-38
Published Date: 9 June 2010
Insights into the classification of small GTPases
Dominik Heider, Sascha Hauke, Martin Pyka, et al
Advances and Applications in Bioinformatics and Chemistry 2010, 3:15-24
Published Date: 21 May 2010
Predicting recurrent aphthous ulceration using genetic algorithms-optimized neural networks
Najla S Dar-Odeh, Othman M Alsmadi, Faris Bakri, et al
Advances and Applications in Bioinformatics and Chemistry 2010, 3:7-13
Published Date: 14 May 2010
Estimating affinities of calcium ions to proteins
Stefan Franke, Julia Herfurth, Daniel Hoffmann
Advances and Applications in Bioinformatics and Chemistry 2010, 3:1-6
Published Date: 15 March 2010
Logical network of genotoxic stress-induced NF-kappaB signal transduction predicts putative target structures for therapeutic intervention strategies
Rainer Poltz, Raimo Franke, Katrin Schweitzer, et al
Advances and Applications in Bioinformatics and Chemistry 2009, 2:125-138
Published Date: 3 December 2009
Computer applications for prediction of protein–protein interactions and rational drug design
Solène Grosdidier, Max Totrov, Juan Fernández-Recio
Advances and Applications in Bioinformatics and Chemistry 2009, 2:101-123
Published Date: 10 November 2009
Classification of heterodimer interfaces using docking models and construction of scoring functions for the complex structure prediction
Yuko Tsuchiya, Eiji Kanamori, Haruki Nakamura, et al
Advances and Applications in Bioinformatics and Chemistry 2009, 2:79-100
Published Date: 22 September 2009
Evaluating the efficacy of a structure-derived amino acid substitution matrix in detecting protein homologs by BLAST and PSI-BLAST
Nalin CW Goonesekere
Advances and Applications in Bioinformatics and Chemistry 2009, 2:71-78
Published Date: 5 June 2009
Performance of PLS regression coefficients in selecting variables for each response of a multivariate PLS for omics-type data
Giuseppe Palermo, Paolo Piraino, Hans-Dieter Zucht
Advances and Applications in Bioinformatics and Chemistry 2009, 2:57-70
Published Date: 13 May 2009
Identification of longevity genes with systems biology approaches
Yuanyou Tan, John M Bush, Weijiu Liu, Fusheng Tang
Advances and Applications in Bioinformatics and Chemistry 2009, 2:49-56
Published Date: 27 February 2009
On calculating the probability of a set of orthologous sequences
Junfeng Liu, Liang Chen, Hongyu Zhao, Dirk F Moore, Yong Lin, Weichung Joe Shih
Advances and Applications in Bioinformatics and Chemistry 2009, 2:37-48
Published Date: 26 February 2009
An online conserved SSR discovery through cross-species comparison
Tun-Wen Pai, Chien-Ming Chen, Meng-Chang Hsiao, Ronshan Cheng, Wen-Shyong Tzou, Chin-Hua Hu
Advances and Applications in Bioinformatics and Chemistry 2009, 2:23-35
Published Date: 8 February 2009
A gene expression ratio-based diagnostic test for bladder cancer
Lingsheng Dong, Andrew J Bard, William G Richards, Matthew D Nitz, Dan Theodorescu, et al
Advances and Applications in Bioinformatics and Chemistry 2009, 2:17-22
Published Date: 12 January 2009
The development of an affinity evaluation and prediction system by using protein–protein docking simulations and parameter tuning
Koki Tsukamoto, Tatsuya Yoshikawa, Kiyonobu Yokota, Yuichiro Hourai, Kazuhiko Fukui
Advances and Applications in Bioinformatics and Chemistry 2009, 2:1-15
Published Date: 12 January 2009
A simple method for assessing the strength of evidence for association at the level of the whole gene
David Curtis, Anna E Vine, Jo Knight
Advances and Applications in Bioinformatics and Chemistry 2008, 1:115-120
Published Date: 17 November 2008
Discrimination between biological interfaces and crystal-packing contacts
Yuko Tsuchiya, Haruki Nakamura, Kengo Kinoshita
Advances and Applications in Bioinformatics and Chemistry 2008, 1:99-113
Published Date: 2 November 2008
A network biology approach evaluating the anticancer effects of bortezomib identifies SPARC as a therapeutic target in adult T-cell leukemia cells
Junko H Ohyashiki, Ryoko Hamamura, Chiaki Kobayashi, Yu Zhang, Kazuma Ohyashiki
Advances and Applications in Bioinformatics and Chemistry 2008, 1:85-98
Published Date: 30 October 2008
Is gene activity in plant cells affected by UMTS-irradiation? A whole genome approach
Julia C Engelmann, Rosalia Deeken, Tobias Müller, Günter Nimtz, M Rob G Roelfsema, Rainer Hedrich
Advances and Applications in Bioinformatics and Chemistry 2008, 1:71-83
Published Date: 8 October 2008
Evolution of a domain conserved in microtubule-associated proteins of eukaryotes
Alex S Rajangam, Hongqian Yang, Tuula T Teeri, Lars Arvestad
Advances and Applications in Bioinformatics and Chemistry 2008, 1:51-69
Published Date: 23 September 2008
Prion disease induced alterations in gene expression in spleen and brain prior to clinical symptoms
Hyeon O Kim, Greg P Snyder, Tyler M Blazey, Richard E Race, Bruce Chesebro, Pamela J Skinner
Advances and Applications in Bioinformatics and Chemistry 2008, 1:29-50
Published Date: 7 September 2008
A method to enhance the hit ratio by a combination of structure-based drug screening and ligand-based screening
Katsumi Omagari, Daisuke Mitomo, Satoru Kubota, Haruki Nakamura, Yoshifumi Fukunishi
Advances and Applications in Bioinformatics and Chemistry 2008, 1:19-28
Published Date: 12 August 2008
Identification of significant genes in genomics using Bayesian variable selection methods
Eugene Lin, Lung-Cheng Huang
Advances and Applications in Bioinformatics and Chemistry 2008, 1:13-18
Published Date: 1 July 2008
Binarization of medical images based on the recursive application of mean shift filtering: Another algorithm
Roberto Rodríguez
Advances and Applications in Bioinformatics and Chemistry 2008, 1:1-12
Published Date: 28 May 2008