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Advances and Applications in Bioinformatics and Chemistry


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In silico-based vaccine design against Ebola virus glycoprotein

Dash R, Das R, Junaid M, Akash MFC, Islam A, Hosen SMZ

Advances and Applications in Bioinformatics and Chemistry 2017, 10:11-28

Published Date: 21 March 2017

Mapping circulating serum miRNAs to their immune-related target mRNAs

Nosirov B, Billaud J, Vandenbon A, Diez D, Wijaya E, Ishii KJ, Teraguchi S, Standley DM

Advances and Applications in Bioinformatics and Chemistry 2017, 10:1-9

Published Date: 2 February 2017

Molecular docking as a popular tool in drug design, an in silico travel

de Ruyck J, Brysbaert G, Blossey R, Lensink MF

Advances and Applications in Bioinformatics and Chemistry 2016, 9:1-11

Published Date: 24 June 2016

Identification of potential drug targets by subtractive genome analysis of Escherichia coli O157:H7: an in silico approach

Mondal SI, Ferdous S, Jewel NA, Akter A, Mahmud Z, Islam MM, Afrin T, Karim N

Advances and Applications in Bioinformatics and Chemistry 2015, 8:49-63

Published Date: 8 December 2015

Molecular dynamics simulations: advances and applications

Hospital A, Goñi JR, Orozco M, Gelpí JL

Advances and Applications in Bioinformatics and Chemistry 2015, 8:37-47

Published Date: 19 November 2015

Identification and analysis of potential targets in Streptococcus sanguinis using computer aided protein data analysis

Chowdhury MRH, Bhuiyan MIK, Saha A, Mosleh IM, Mondol S, Ahmed CMS

Advances and Applications in Bioinformatics and Chemistry 2014, 7:45-54

Published Date: 25 November 2014

The hemagglutinin of the influenza A(H1N1)pdm09 is mutating towards stability

Castelán-Vega JA, Magaña-Hernández A, Jiménez-Alberto A, Ribas-Aparicio RM

Advances and Applications in Bioinformatics and Chemistry 2014, 7:37-44

Published Date: 3 October 2014

Hypergeometric analysis of tiling-array and sequence data: detection and interpretation of peaks

Taskesen E, Hoogeboezem R, Delwel R, Reinders MJT

Advances and Applications in Bioinformatics and Chemistry 2013, 6:55-62

Published Date: 25 October 2013

Design of multiligand inhibitors for the swine flu H1N1 neuraminidase binding site

Narayanan MM, Nair CB, Sanjeeva SK, Rao PVS, Pullela PK, Barrow CJ

Advances and Applications in Bioinformatics and Chemistry 2013, 6:47-53

Published Date: 19 August 2013

Antigenic heterogeneity of capsid protein VP1 in foot-and-mouth disease virus (FMDV) serotype Asia1

Alam SM, Amin R, Rahman MZ, Hossain MA, Sultana M

Advances and Applications in Bioinformatics and Chemistry 2013, 6:37-46

Published Date: 13 August 2013

Genetic and chemical knockdown: a complementary strategy for evaluating an anti-infective target

Ramachandran V, Singh R, Yang X, Tunduguru R, Mohapatra S, Khandelwal S, Patel S, Datta S

Advances and Applications in Bioinformatics and Chemistry 2013, 6:1-13

Published Date: 7 February 2013

Contact-based ligand-clustering approach for the identification of active compounds in virtual screening

Mantsyzov AB, Bouvier G, Evrard-Todeschi N, Bertho G

Advances and Applications in Bioinformatics and Chemistry 2012, 5:61-79

Published Date: 6 September 2012

A novel biclustering approach with iterative optimization to analyze gene expression data

Sutheeworapong S, Ota M, Ohta H, Kinoshita K

Advances and Applications in Bioinformatics and Chemistry 2012, 5:23-59

Published Date: 7 September 2012

B-Pred, a structure based B-cell epitopes prediction server

Giacò L, Amicosante M, Fraziano M, Gherardini PF, Ausiello G, Helmer-Citterich M, Colizzi V, Cabibbo A

Advances and Applications in Bioinformatics and Chemistry 2012, 5:11-21

Published Date: 25 July 2012

FDR-FET: an optimizing gene set enrichment analysis method

Rui-Ru Ji, Karl-Heinz Ott, Roumyana Yordanova, et al

Advances and Applications in Bioinformatics and Chemistry 2011, 4:37-42

Published Date: 15 March 2011

LifePrint: a novel k-tuple distance method for construction of phylogenetic trees

Fabián Reyes-Prieto, Adda J García-Chéquer, Hueman Jaimes-Díaz, et al

Advances and Applications in Bioinformatics and Chemistry 2011, 4:13-27

Published Date: 20 January 2011

MODENA: a multi-objective RNA inverse folding

Akito Taneda

Advances and Applications in Bioinformatics and Chemistry 2011, 4:1-12

Published Date: 22 December 2010

SNP analysis of follistatin gene associated with polycystic ovarian syndrome

Palanisamy Panneerselvam, Kanakarajan Sivakumari, Ponmani Jayaprakash, et al

Advances and Applications in Bioinformatics and Chemistry 2010, 3:111-119

Published Date: 13 December 2010

A kinetic platform for in silico modeling of the metabolic dynamics in Escherichia coli

Aditya Barve, Anvita Gupta, Suresh M Solapure, et al 

Advances and Applications in Bioinformatics and Chemistry 2010, 3:97-110

Published Date: 7 December 2010

Construction of random perfect phylogeny matrix

Mehdi Sadeghi, Hamid Pezeshk, Changiz Eslahchi, et al

Advances and Applications in Bioinformatics and Chemistry 2010, 3:89-96

Published Date: 16 November 2010

Efficient algorithms for multidimensional global optimization in genetic mapping of complex traits

Kajsa Ljungberg, Kateryna Mishchenko, Sverker Holmgren

Advances and Applications in Bioinformatics and Chemistry 2010, 3:75-88

Published Date: 28 October 2010

An unsupervised strategy for biomedical image segmentation

Roberto Rodríguez, Rubén Hernández

Advances and Applications in Bioinformatics and Chemistry 2010, 3:67-73

Published Date: 13 September 2010

Molecular biocoding of insulin

Lutvo Kuric

Advances and Applications in Bioinformatics and Chemistry 2010, 3:45-58

Published Date: 28 July 2010

Insights into the classification of small GTPases

Dominik Heider, Sascha Hauke, Martin Pyka, et al

Advances and Applications in Bioinformatics and Chemistry 2010, 3:15-24

Published Date: 21 May 2010

Predicting recurrent aphthous ulceration using genetic algorithms-optimized neural networks

Najla S Dar-Odeh, Othman M Alsmadi, Faris Bakri, et al

Advances and Applications in Bioinformatics and Chemistry 2010, 3:7-13

Published Date: 14 May 2010

Estimating affinities of calcium ions to proteins

Stefan Franke, Julia Herfurth, Daniel Hoffmann

Advances and Applications in Bioinformatics and Chemistry 2010, 3:1-6

Published Date: 15 March 2010

Computer applications for prediction of protein–protein interactions and rational drug design

Solène Grosdidier, Max Totrov, Juan Fernández-Recio

Advances and Applications in Bioinformatics and Chemistry 2009, 2:101-123

Published Date: 10 November 2009

Identification of longevity genes with systems biology approaches

Yuanyou Tan, John M Bush, Weijiu Liu, Fusheng Tang

Advances and Applications in Bioinformatics and Chemistry 2009, 2:49-56

Published Date: 27 February 2009

On calculating the probability of a set of orthologous sequences

Junfeng Liu, Liang Chen, Hongyu Zhao, Dirk F Moore, Yong Lin, Weichung Joe Shih

Advances and Applications in Bioinformatics and Chemistry 2009, 2:37-48

Published Date: 26 February 2009

An online conserved SSR discovery through cross-species comparison

Tun-Wen Pai, Chien-Ming Chen, Meng-Chang Hsiao, Ronshan Cheng, Wen-Shyong Tzou, Chin-Hua Hu

Advances and Applications in Bioinformatics and Chemistry 2009, 2:23-35

Published Date: 8 February 2009

A gene expression ratio-based diagnostic test for bladder cancer

Lingsheng Dong, Andrew J Bard, William G Richards, Matthew D Nitz, Dan Theodorescu, et al

Advances and Applications in Bioinformatics and Chemistry 2009, 2:17-22

Published Date: 12 January 2009

The development of an affinity evaluation and prediction system by using protein–protein docking simulations and parameter tuning

Koki Tsukamoto, Tatsuya Yoshikawa, Kiyonobu Yokota, Yuichiro Hourai, Kazuhiko Fukui

Advances and Applications in Bioinformatics and Chemistry 2009, 2:1-15

Published Date: 12 January 2009

Discrimination between biological interfaces and crystal-packing contacts

Yuko Tsuchiya, Haruki Nakamura, Kengo Kinoshita

Advances and Applications in Bioinformatics and Chemistry 2008, 1:99-113

Published Date: 2 November 2008

A network biology approach evaluating the anticancer effects of bortezomib identifies SPARC as a therapeutic target in adult T-cell leukemia cells

Junko H Ohyashiki, Ryoko Hamamura, Chiaki Kobayashi, Yu Zhang, Kazuma Ohyashiki

Advances and Applications in Bioinformatics and Chemistry 2008, 1:85-98

Published Date: 30 October 2008

Is gene activity in plant cells affected by UMTS-irradiation? A whole genome approach

Julia C Engelmann, Rosalia Deeken, Tobias Müller, Günter Nimtz, M Rob G Roelfsema, Rainer Hedrich

Advances and Applications in Bioinformatics and Chemistry 2008, 1:71-83

Published Date: 8 October 2008

Evolution of a domain conserved in microtubule-associated proteins of eukaryotes

Alex S Rajangam, Hongqian Yang, Tuula T Teeri, Lars Arvestad

Advances and Applications in Bioinformatics and Chemistry 2008, 1:51-69

Published Date: 23 September 2008

Prion disease induced alterations in gene expression in spleen and brain prior to clinical symptoms

Hyeon O Kim, Greg P Snyder, Tyler M Blazey, Richard E Race, Bruce Chesebro, Pamela J Skinner

Advances and Applications in Bioinformatics and Chemistry 2008, 1:29-50

Published Date: 7 September 2008

A method to enhance the hit ratio by a combination of structure-based drug screening and ligand-based screening

Katsumi Omagari, Daisuke Mitomo, Satoru Kubota, Haruki Nakamura, Yoshifumi Fukunishi

Advances and Applications in Bioinformatics and Chemistry 2008, 1:19-28

Published Date: 12 August 2008