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RNA Binding Motif Protein 3 Promotes Cell Metastasis and Epithelial–Mesenchymal Transition Through STAT3 Signaling Pathway in Hepatocellular Carcinoma

Authors Zhang L, Zhang Y, Shen D, Chen Y, Feng J, Wang X, Ma L, Liao Y , Tang L 

Received 7 December 2021

Accepted for publication 21 April 2022

Published 9 May 2022 Volume 2022:9 Pages 405—422


Checked for plagiarism Yes

Review by Single anonymous peer review

Peer reviewer comments 2

Editor who approved publication: Dr Xin Wei Wang

Lu Zhang,1,* Yi Zhang,1,* Dongliang Shen,1 Ying Chen,1 Jianguo Feng,2 Xing Wang,1 Lunkun Ma,1 Yi Liao,3,4 Liling Tang1

1Key Laboratory of Biorheological Science and Technology, Ministry of Education, College of Bioengineering, Chongqing University, Chongqing, 400044, People’s Republic of China; 2Southwest Medical University, Department Anesthesiology, Affiliated Hospital, Luzhou, 646000, People’s Republic of China; 3The Central Laboratory, Shenzhen Second People’s Hospital/First Affiliated Hospital of Shenzhen University Health Science Center, Shenzhen, Guangdong, 518035, People’s Republic of China; 4Department of Thoracic Surgery, Southwest Hospital, Army Medical University, Chongqing, 400038, People’s Republic of China

*These authors contributed equally to this work

Correspondence: Liling Tang; Yi Liao, Tel +86 139 9605 1730 ; +86 139 9656 6993, Fax +86-23-65111901 ; +86-23-68763333, Email [email protected]; [email protected]

Purpose: RNA binding motif protein 3 (RBM3) has been reported to be dysregulated in various cancers and associated with tumor aggressiveness. Epithelial–mesenchymal transition (EMT) is an important biological process by which tumor cells acquire metastatic abilities. This study aimed to explore the regulatory and molecular mechanisms of RBM3 in EMT process.
Methods: Western blotting, IHC, and qRT-PCR were performed to evaluate the expression of target genes. Transwell assay was used to investigate the migration and invasion. RNA immunoprecipitation and luciferase reporter assay were performed to explore the correlation of RBM3 with STAT3 or microRNA-383. Animal HCC models were used to explore the role of RBM3 in metastasis in vivo.
Results: RBM3 was highly expressed in HCC tissues compared to healthy tissues, and its level was negatively correlated with the prognosis of HCC patients. RBM3 overexpression accelerated migration and invasion, promoted EMT process, and activated STAT3 signaling. EMT induced by RBM3 was not only attenuated by inhibiting pSTAT3 via S3I-201 but also abolished by suppressing STAT3 expression via siRNAs. Mechanistically, RBM3 increased STAT3 expression by stabilizing STAT3 mRNA via binding to its mRNA. As an upstream target of RBM3, microRNA-383 inhibited RBM3 expression by binding to its 3ʹUTR and resulted in the inhibition of the EMT process. Inhibition of RBM3 in HCC animal models prolonged survival and ameliorated malignant phenotypes in mice.
Conclusion: Our findings support that RBM3 promotes HCC metastasis by activating STAT3 signaling.

Keywords: RBM3, metastasis, EMT, STAT3, microRNA-383


Hepatocellular carcinoma (HCC), one of the four most common types of cancer, always holds a high morbidity and mortality.1 Although increasing number of studies have explored the relevant molecular mechanisms, the prognosis of HCC remains unsatisfactory, mainly due to metastasis and postoperative recurrence.2–4 Nowadays, the cancer therapy is still a very intractable problem because of its highly metastatic nature. Metastasis of tumor cells is life-threatening, and it could lead to the spread of tumor cells from situ tissues to other healthy tissues. Therefore, it is of great clinical value to explore the underlying mechanisms of tumor metastasis. Epithelial–mesenchymal transition (EMT) is an important biological process that cannot be ignored in the acquisition of aggressive capabilities by tumor cells. Epithelial cells acquire motility through EMT, and the migration speed of mesenchymal cells could also be improved by adopting amoeboid features.5 CD138, a positive marker of cell migration, was increased in human mammary epithelial cells undergoing EMT induced by TGFβ1 or 4-hydroxytamoxifen.6 Furthermore, the mesenchymal state allows cells to migrate to distant organs and maintain stemness.7 EMT is characterized by losing cell morphology, polarity, adhesion and down-regulation of E-cadherin, as well as up-regulation of N-cadherin and Vimentin.8 Primary tumors could acquire migratory and invasive abilities through EMT and form metastases.9,10 A large number of studies have shown that EMT is associated with metastasis of various cancers, such as breast cancer,11 nasopharyngeal carcinoma,12 head and neck squamous carcinoma,13 colorectal cancer14 and so on. EMT has been shown to play a vital role in the development and progression of HCC, providing the possibility for HCC to adapt to the tumor microenvironment and acquire the ability to migrate and invade.15–17 The importance of EMT in HCC is obvious, and thus it is vitally significant to explore the potential mechanisms of EMT in the regulation of HCC progression.

Signal transducer and activator of transcription 3 (STAT3) is known to be involved in cell proliferation,18,19 survival,20 metastasis21 and immune response.22,23 Numerous articles have demonstrated the great significance of STAT3 in the EMT process. For example, Guo et al24 found that miR-125b-5p inhibited the expression of STAT3 by binding to its 3’ UTR, thereby suppressing EMT in HCC cells. In breast cancer, SIX4 could induce the activation of EMT by directly interacting with STAT3 and increasing the phosphorylation expression of STAT3.25

RNA binding motif protein 3 (RBM3) is a member of the highly conserved RNA binding proteins that participate in cellular processes by binding to mRNA of target genes.26 Moreover, it acts as a cold shock response protein to protect cells from hypothermia-induced death.27 Under normal physiological conditions, RBM3 is essential for cell survival and proliferation. However, many preclinical studies have shown that RBM3 expression is dysregulated in various cancers, such as reduced expression in urothelial bladder cancer,28 colorectal cancer,29 non-small cell lung cancer,30 and increased expression in epithelial ovarian cancer,31 prostate cancer,32 and astrocytoma.33 The dysregulation of RBM3 suggests that RBM3 may be involved in tumor progression. Furthermore, RBM3 has been demonstrated to be associated with the migration and invasion of tumor cells. In urothelial carcinoma, RBM3 expression was extremely higher in metastases than in primary tumors.34 Similarly, RBM3 promoted the proliferation and metastasis of human breast cancer cells through binding to 3ʹUTR of actin-related protein 2/3 complex subunit 2 (ARPC2).35 Such a large number of studies have shown the positive regulation of RBM3 on the migration and invasion of various tumor cells. Interestingly, the relationship between RBM3 and EMT, the classical process by which cells acquire migration and invasion abilities, has not been reported. Moreover, the correlation between RBM3, EMT and STAT3 signaling has not been demonstrated.

In the present study, we identified the functional role of RBM3 on EMT process in HCC for the first time. Our data showed that RBM3 was overexpressed in human HCC tissues and HCC cell lines, and RBM3 overexpression was correlated with poor prognosis in HCC patients. Mechanistically, RBM3 bound directly to STAT3 mRNA to enhance its stability, and the resulting accumulation of STAT3 protein induced the EMT process and promoted the progression of HCC. The upstream target of RBM3 was predicted at TargetScan database and further validated.

Materials and Methods

Cell Culture

HEK-293T cell line, normal human liver cell HL-7702 and human hepatoma carcinoma cells MHCC97H were cultured in Dulbecco’s Modified Eagle Medium (HyClone, USA) containing 10% fetal bovine serum (FBS), 100U/mL penicillin, and 100 μg/mL streptomycin. HEK-293T and HL-7702 were obtained from The Third Military Medical University. MHCC97H was purchased from ShangHai MEIXUAN Biological Science and Technology (China). HepG2 cell line was kindly provided by Dr Tang from Chongqing Medical University and cultured in Minimum Eagle’s Medium (HyClone, USA) containing 10% FBS, 100U/mL penicillin, and 100 μg/mL streptomycin. For cells stably expressing RBM3, RBM3 shRNA, or scrambled shRNA, the medium was supplemented with 1 μg/mL puromycin. All cells were incubated in a humidified cell culture incubator with 5% CO2 at 37℃. All cell lines were assessed to be free of mycoplasma infection.


The cDNA of human RBM3 was cloned into the polyclonal site of pLenti-CMV-EGFP (Addgene) between the BamH I and Sal I restriction sites to construct plasmid pLenti-CMV-RBM3. In order to stably knock down RBM3 expression, shRNAs targeting two different positions of RBM3 mRNA were designed and cloned between the Age I and EcoR I restriction sites of the plasmid pLKO.1-TRC (Addgene) cloning vector, forming plasmid pLKO.1-RBM3-shRNA #1 and #2, respectively. A scrambled shRNA was designed as control (plasmid pLKO.1-scrambled-shRNA). The oligonucleotide primers used to generate RBM3 shRNAs are listed in Table 1.

Table 1 Oligonucleotide Primer Sets Used to Generate Scrambled shRNA and RBM3 shRNA

Establishment of Stable Cell Lines

HepG2 cell lines overexpressing EGFP or RBM3 (referred to as HepG2-EGFP or HepG2-RBM3) were established by lentiviral transfection of pLenti-CMV-EGFP or pLenti-CMV-RBM3 plasmids. In brief, HEK-293T packaging cells were co-transfected with pLenti-CMV-EGFP/RBM3, pCMV-VSV-G and pCMV-dR8.2 dvpr using Effectene Transfection Reagent (QIAGEN, Germany) according to the manufacturer’s protocol. After 48 hours of incubation, the viral supernatant was collected. HepG2 cells were infected with lentiviral particles for 24 hours and then screened with 2μg/mL puromycin for 1 week. MHCC97H cells were infected with lentiviral particles, which were established by lentiviral transfection of pLKO.1-RBM3-shRNA#s or pLKO.1-scrambled-shRNA in the same way as described above. Puromycin (2 μg/mL) was used to screen stable cell lines. MHCC97H cell lines expressing RBM3 shRNA or scrambled shRNA were referred to as MHCC97H-RBM3-shRNA#s or MHCC97H-scrambled-shRNA. HepG2-pLNCX2 and HepG2-pLNCX2-RBM3 cells were established by retroviral transfection with pLNCX2/pLNCX2-RBM3, pCMV-VSV-G and pUMVC as above. Geneticin (2 mg/mL) was used to screen the stable cell lines.

RNA Interference (RNAi)

MHCC97H cells were grown overnight to approximately 40% confluence and transfected with human RBM3 short interfering RNA (siRNA) for 6 hours. The transfection medium was then replaced with a fresh medium, and the cells were cultured for another 48 hours. In order to knock down STAT3 expression, HepG2-EGFP and HepG2-RBM3 cells were transfected with human STAT3 siRNAs. Transfection was performed with X-tremeGENE siRNA Transfection Reagent (Roche, Switzerland) according to the manufacturer’s instructions. The RBM3 siRNA sequences were as follows:





The STAT3 siRNA sequences were as follows:



mRNA Decay Analyses

MHCC97H cells were grown overnight to approximately 40% confluence and transfected with RBM3-siRNA or control siRNA for 6 hours. Then, the transfection medium was replaced with a fresh medium, and cells were cultured for another 48 hours. Cells were lysed with lysis buffer (1% Triton-100, 0.1% sodium dodecyl sulfate) and added with 5 μM Actinomycin D (APE×BIO, USA) for 0, 20, 40 and 60 min. RNAs were extracted at specific time and reversed into cDNAs. qRT-PCR was performed to detect RBM3 and STAT3 expression.

Western Blotting

Cells were collected and lysed using RIPA buffer containing a mixture of PMSF and phosphatase inhibitors. Cell lysates were incubated on ice for 30 min with shaking every 5 min and then centrifuged at 13,000 revolutions per minute (rpm) for 10 min at 42℃. Protein lysates were used to measure the expression of target proteins. Equal amounts of proteins were resolved on SDS-PAGE and transferred to a 0.45 μM PVDF membrane. The membrane was then blocked by slowly shaking with 5% nonfat milk for 1 hour at room temperature, followed by washing with Tris-buffered saline containing 0.1% Tween-20 (TBST) for 10 min and repeated 3 times. The primary antibody was incubated overnight at 4℃, then washed with TBST for 10 min, repeated 3 times, followed by incubating with the corresponding secondary antibody for 1 hour at room temperature with slow shaking. The images were taken with a standard chemiluminescence. The anti-E-cadherin, anti-N-cadherin, anti-p-STAT3 and anti-STAT3 antibodies were purchased from Cell Signaling Technology. The anti-RBM3, anti-VEGF, anti-MMP2 and anti-MMP9 antibodies were purchased from Abcam. The anti-Vimentin antibody was purchased from Santa Cruz. The anti-GAPDH antibody was purchased from Proteintech.

Immunohistochemistry (IHC)

The expression of RBM3, STAT3, E-cadherin, N-cadherin and Vimentin in formalin-fixed, paraffin-embedded hepatocellular carcinoma tissue sections were examined by immunohistochemistry using a Rabbit Streptomycin-Biotin detection system (Zsbio, China). Briefly, tissue slides were deparaffinized in xylene and rehydrated in alcohol. Antigen retrieval was achieved using a hot water bath and sodium citrate buffer. Endogenous peroxidase blocker was added for 10 minutes. Sections were blocked with normal goat serum for 15 minutes. Sections were then incubated overnight at 4℃ with the indicated primary antibody. Then, biotin-labeled goat anti-rabbit IgG was added for 20 minutes. Next, horseradish enzyme labeled streptomycin buffer and DAB buffer (Zsbio, China) were added for 10–15 min, respectively. At last, sections were counterstained with hematoxylin for 2 minutes. The anti-E-cadherin, anti-STAT3 antibodies were purchased from Cell Signaling Technology. The anti-RBM3 antibody was purchased from Proteintech.

The hepatocellular carcinoma tissue microarray containing ninety tumor tissues and their paired noncancerous tissues were randomly collected from HCC patients who had undergone surgical resection. None of these patients received any preoperative antitumor therapy. RBM3 expression was evaluated using a graded semi-quantitative scoring system. Staining intensity was classified as none (0), weak (1), strong (2), or very strong (3), and staining patterns were classified as negative (0: ≤10%), sporadic (1: 11–25%), focal (2: 26–50%) or diffuse (3: ≥51%). The overall score was calculated by multiplying intensity and positivity scores as follows: 0 (negative), 1–4 (moderately positive), 5–9 (strongly positive). To analyze clinical significance and prognosis, malignant samples with strongly positive RBM3 staining were classified as RBM3/H, while RBM3/L indicated moderately positive and negative expression.

Reverse Transcription Polymerase Reaction (RT-PCR) and Quantitative Real-Time PCR (qRT-PCR)

RNA was extracted using RNAsimple Total RNA Kit (TIANGEN, China) according to the manufacturer’s instructions. cDNA was then obtained by RT-PCR using the PrimerScriptTM RT reagent Kit with Gdna Eraser (Takara, Japan). The concentration of cDNA was measured using Nanodrop 2000 (Thermo Fisher Scientific, USA). qRT-PCR was performed on the first strand of cDNA with primers using NovoStart SYBR qPCR SuperMix Plus (Novoprotein, China). The primers were as follows:




     Reverse 5’-TTGCCGCCTCTTCCAGT-3’





Transwell Migration and Invasion Assays

Cells were digested into a single cell suspension. 1×104 cells were seeded in the upper chambers with 200 μL serum-free medium. Transwell chamber (Corning, USA) was paved with matrigel mix (Corning, USA) for invasion assay. The bottom chamber was filled with a medium containing 10% FBS. After incubation at 37℃ for 24 hours, the upper chamber was washed with cold phosphate buffer saline (PBS) and fixed with cold methanol at 4℃, then stained with crystal violet (Kaigen, China) for 20 min. Finally, the cells in different fields were photographed and counted.

RNA Immunoprecipitation Assay

HepG2-RBM3 cells were cultured in 10 cm dishes for 48 hours to 80% confluence. Cells were washed with cold PBS and lysed on ice with a mixture of RIPA buffer, PMSF, RNase inhibitor and protease inhibitor. The cell extracts were then placed under ultraviolet light for 30 seconds and incubated on ice for 30 min, shaking every 10 min. Next, cell lysates were incubated with anti-RBM3 (Proteintech, USA) or anti-IgG (Santa Cruz, USA) overnight at 4℃. The cell lysate bound to the antibody was then incubated with Protein A+G Agarose (Beyotime, China). Finally, the isolated RNA was extracted with RNAsimple Total RNA Kit (TIANGEN, China), and the purified RNA was subjected to Reverse Transcription PCR to get cDNA, which was then used for semi-quantitative PCR and qRT-PCR analysis.

Luciferase Reporter Assay

The sequences of RBM3-3ʹUTR and corresponding mutation were designed, synthesized and inserted into pmirGLO Dual-luciferase miRNA Target Expression Vector (Promega, USA), named wt-RBM3 and mut-RBM3, respectively. These two plasmids were co-transfected with miR-NC or miR-383 mimics into HepG2 cells. Relative luciferase activity was examined with a Dual Luciferase Assay Kit (Promega, USA) according to the manufacturer’s protocol.

Animal Experiments

Eight-week-old female BALB/c–nu mice were purchased from the Third Military Medical University. MHCC97H-RBM3-shRNA cells and MHCC97H-scrambled-shRNA cells (2 × 105) or HepG2-pLNCX2-RBM3 cells and HepG2-pLNCX2 cells (2 × 105) were injected into BALB/c–nu mice via tail vein. Mice were sacrificed after natural death, livers were isolated and fixed in 4% neutral-buffered formalin, and the survival days were recorded. All animal studies were performed in strict accordance with the Laboratory Animal Welfare and Ethics Committee of Chongqing University.

Statistical Analysis

The data were expressed as the mean ± SEM. Cumulative survival curves were calculated with the Kaplan–Meier method and analyzed with the Log rank test. The statistical significance of differences for the mean values of group was determined with Student’s t-test. Differences with a P-value of less than 0.05 were considered significant.


Elevated Expression of RBM3 in HCC Samples Correlates with Poor Prognosis

To investigate the clinical significance of RBM3 in HCC, we measured the expression of RBM3 in 90 HCC samples and their paired noncancerous tissues. Strong, moderate or weak expression of RBM3 in HCC and noncancerous samples are shown in the representative images (Figure 1A). In total, 33 noncancerous samples (36.67%) showed strong RBM3 expression, while the percentage of moderate and negative RBM3 expression was 57.78% (52 cases) and 5.56% (5 cases), respectively (Figure 1B). In contrast, RBM3 was relatively high in HCC tissues. Fifty-nine HCC samples (65.55%) showed strong RBM3 expression, while 28 HCC samples (31.33%) and 3 HCC samples (3.33%) showed moderate and negative RBM3 expression, respectively (Figure 1C). Samples with strongly positive RBM3 staining were identified as high RBM3 expression (RBM3/H), and moderately positive and negative expression were identified as low RBM3 expression (RBM3/L). Further expression analysis showed that RBM3 was highly expressed in HCC tumor tissues compared to the corresponding adjacent noncancerous tissues (Figure 1D). Kaplan–Meier analysis indicated that high expression of RBM3 was correlated with significantly shorter overall survival (Figure 1E). These results were consistent with the analysis of the Cancer Genome Atlas (TCGA) database (Figure 1F and G). TCGA database also showed that HCC patients with high RBM3 expression exhibited advanced tumor progression (Figure 1H). Additionally, RBM3 expression was associated with various clinical clinicopathological parameters, including age, death, tumor grade and recurrence in HCC patients (Table 2).

Table 2 Correlation of Clinical Features and Clinicopathological Parameters of the Hepatocellular Carcinoma Patients and RBM3 Expression Analyzed by IHC

Figure 1 High expression of RBM3 is correlated with poor prognosis and shorter overall survival. (A) Representative images of RBM3 expression in tumor tissues and adjacent noncancerous tissues by immunohistochemical staining (magnification × 200). (B and C) Pie chart of IHC results of RBM3 expression in noncancerous and tumor tissues of 90 HCC patients. (D) Statistics of immunohistochemical staining for relative RBM3 expression in HCC tissues (n=85) and corresponding adjacent healthy tissues (n=85). Five HCC tissues and five healthy tissues showed a score of 0, so their log2 results are not exhibited. (E) Kaplan–Meier curves of cumulative survival plots for 88 HCC patients (two patients were lost to follow-up), including 58 patients with high RBM3 expression and 30 patients with low RBM3 expression. (F) Relative RBM3 expression in normal participants (n=50) and HCC patients (n=374) in the TCGA database. (G) Kaplan–Meier survival curves of cumulative survival plots for HCC patients from the TCGA database. The 350 HCC patients who participated in it included 144 patients with high RBM3 expression and 206 patients with low RBM3 expression. (H) Correlation between RBM3 expression and tumor progression from the TCGA database (stage I, n=173; stage II, n=87; stage III, n=85; stage IV, n=5). The log-rank (Mantel-Cox) test was used to compare differences between two groups. Error bar: mean ± SEM. *P < 0.05.

RBM3 Promotes the EMT Process in HCC Cells

Protein level of RBM3 was evaluated in HCC cell lines and normal human liver cell HL-7702. Relatively high expression of RBM3 was observed in the HCC cell lines, HepG2 and MHCC97H (Figure 2A). We constructed a HepG2-RBM3 cell line to overexpress RBM3 (Figure 2B) and found that overexpression of RBM3 down-regulated the expression of E-cadherin while up-regulating the expression of N-cadherin and Vimentin (Figure 2C). In order to knock down RBM3 expression in MHCC97H cells, four RBM3-specific siRNAs were designed. Western blotting results showed that RBM3-siRNA#1 and #3 successfully reduced the expression of RBM3 (Figure 2D). To inhibit the expression of RBM3 in MHCC97H cells more effectively, we mixed RBM3-siRNA#1 and #3 (Figure 2E) and found that inhibition of RBM3 expression increased the expression of E-cadherin and decreased the expression of N-cadherin and Vimentin (Figure 2F). Moreover, we constructed MHCC97H-RBM3-shRNA#s cells to knock down RBM3 stably (Figure S2A). As with MHCC97H cells transfected with RBM3-siRNAs, inhibition of RBM3 expression by shRNAs also significantly suppressed N-cadherin and Vimentin (Figure S2B). Morphological evidence showed that RBM3 induced the transformation of cell morphology from irregular shape to long spindle-shaped form (Figure S1). These results indicate that RBM3 promotes the EMT process in HCC cells.

Figure 2 RBM3 promotes the EMT process in HCC cells. (A) Western blotting analysis of RBM3 expression in normal human liver cell HL-7702, hepatocellular carcinoma cells HepG2 and MHCC97H. (B) The expression of RBM3 in HepG2-EGFP cells and HepG2-RBM3 cells was detected by Western blotting. Stable cell lines were constructed by infecting HepG2 cells with lentivirus and screening with 2 μg/mL puromycin for 1–2 weeks. (C) Western blotting analysis of the expression of EMT-related factors in HepG2-EGFP cells and HepG2-RBM3 cells. (D) Knockdown efficiency of 4 designed siRNAs for RBM3 expression in MHCC97H cells. (E) Western blotting analysis of RBM3 expression in MHCC97H cells transfected with a mixture of RBM3-specific siRNA#1 and #3. (F) Western blotting analysis of EMT markers was performed in MHCC97H cells transfected with non-specific siRNAs or RBM3-siRNAs. siRNA was added to the cells for 6 hours and total protein was collected after 48 hours. Relative levels of RBM3, E-cadherin, N-cadherin and Vimentin were quantitatively analyzed using Image J. Results are the mean ± SEM (error bar) from three independent experiments. *P < 0.05, **P < 0.01, ***P < 0.001.

RBM3 Accelerates the Migration and Invasion in HCC Cells

EMT is an essential process by which tumor cells acquire the ability to migrate and invade, and we further explored the effect of RBM3 on the metastasis of HepG2 and MHCC97H cells. Our data showed that overexpression of RBM3 significantly increased the migratory and invasive ability of HepG2 cells (Figure 3A), whereas down-regulation of RBM3 decreased the migratory and invasive ability of MHCC97H cells (Figures 3B and S2C). Furthermore, we evaluated the expression of two matrix metalloproteinases (MMPs), MMP2 and MMP9, as well as vascular endothelial growth factor (VEGF). Our data showed that overexpression of RBM3 upregulated the expression of MMP2, MMP9 and VEGF (Figure 3C), whereas inhibition of RBM3 down-regulated the expression of MMP2, MMP9 and VEGF (Figures 3D and S2B). These results suggest that RBM3 promotes the metastasis of HCC cells.

Figure 3 RBM3 accelerates the migration and invasion in HCC cells. (A) Transwell assay for migration and invasion ability of HepG2-RBM3 cells and control HepG2-EGFP cells. Each chamber was plated with 104 cells, and the number of cells was checked after 24 hours. (B) Transwell assay for migration and invasion of MHCC97H cells transfected with non-specific siRNAs or RBM3-siRNAs. MHCC97H cells were transfected with siRNAs for 6 hours, and replaced with fresh DMEM medium and incubated for 48 hours. Then cells were digested into single cell suspensions, 104 cells per chambers were plated and the number of cells was checked after 24 hours. (C and D) Western blotting of metastasis-related factors, MMP2, MMP9 and VEGF in HepG2-EGFP/RBM3 cells and MHCC97H cells transfected with non-specific/RBM3-specific siRNAs. Total proteins were collected after 48 hours. Relative levels of MMP2, MMP9 and VEGF were quantitatively analyzed using Image J. Scale bar, 200 μm. Results are the mean ± SEM (error bar) from three independent experiments. *P < 0.05, **P < 0.01, ***P < 0.001.

Involvement of STAT3 Signaling in RBM3-Induced EMT

Numerous studies have proven that STAT3 signaling pathway is involved in the activation and regulation of EMT.24,36,37 In order to further explore the potential mechanism of RBM3 regulating the EMT process, we investigated the involvement of STAT3 signaling pathway in the EMT process regulated by RBM3 in HCC cells. Western blotting analysis showed that the ratio of pSTAT3/STAT3 and the total STAT3 expression were both up-regulated in EMT-activated HepG2-RBM3 cells (Figure 4A). In contrast, in MHCC97H cells transfected with RBM3-specific siRNAs, the ratio of pSTAT3/STAT3 and total STAT3 expression were both down-regulated (Figure 4B).

Figure 4 STAT3 signaling pathway is involved in RBM3-induced EMT. (A and B) Western blotting analysis of the expression of EMT-related factors, total STAT3 and STAT3 phosphorylation in HepG2-EGFP/RBM3 cells and MHCC97H cells transfected with non-specific siRNA or RBM3-specific siRNA. siRNA was added to MHCC97H cells for 6 hours, and total protein was collected after incubating 48 hours. (C) Western blotting analysis of the inhibitory efficiency of phosphorylation of STAT3 by S3I-201. The concentrations were 0, 50, 100 and 200 μM. Total protein was collected after treating with S3I-201 for 72 hours. (D) Western blotting analysis of the expression of EMT-related factors, total STAT3 and STAT3 phosphorylation in total cell lysates prepared from HepG2-EGFP and HepG2-RBM3 cells treated with 50 μM S3I-201 for 72 hours. (E) Western blotting analysis of the knockdown efficiency of two STAT3-specific siRNAs on STAT3 expression in HepG2 cells. siRNA was added to HepG2 cells for 6 hours, and total protein was collected after 72 hours. (F) Western blotting analysis of indicted proteins in HepG2-EGFP and HepG2-RBM3 cells transfected with non-specific siRNA or STAT3-siRNA for 72 hours. (G) RT-PCR of RIP products verified the binding capacity of RBM3 to STAT3 mRNA in HepG2-RBM3 cells. (H) qRT-PCR of RIP products further confirmed the binding capacity of RBM3 to the mRNA of STAT3 (n=3). (I) Stability of STAT3 mRNA was analyzed by qRT-PCR. After transfection with non-specific siRNA or RBM3-siRNA for 48 hours, MHCC97H cells were treated with 5 μM actinomycin D for 0, 20, 40 and 60 min, and total RNA was collected at certain time. Results are the mean from three independent experiments. (J) Correlation of RBM3 and STAT3 in HCC patients (n=374) from TCGA database. Pearson correlation analysis was used. Relative levels of E-cadherin, N-cadherin, Vimentin, p-STAT3 and total STAT3 were quantitatively analyzed using Image J. Relative p-STAT3 level was the ratio of STAT3 phosphorylation to total STAT3, the relative levels of other proteins were the ratio to GAPDH. Results are the mean ± SEM (error bar) from three independent experiments. *P < 0.05, **P < 0.01, ***P < 0.001.

To demonstrate whether RBM3 promotes the EMT process through STAT3 signaling pathway, we used a selective STAT3 inhibitor S3I-201, which inactivates STAT3 by blocking its phosphorylation and dimerization, and STAT3-specific siRNAs. S3I-201 inhibited STAT3 phosphorylation in a concentration-dependent manner at 72h. S3I-201 (50 μM) was used in further experiments due to its significant inhibitory effect on STAT3 phosphorylation without affecting the total STAT3 expression (Figure 4C). Our data showed that RBM3 overexpression decreased the expression of E-cadherin and increased the expression of N-cadherin, Vimentin, STAT3 and pSTAT3 in HepG2 cells. However, RBM3-induced EMT process was blocked by inhibiting the phosphorylation of STAT3 via S3I-201. Notably, STAT3 expression was not affected (Figure 4D). Since RBM3 significantly up-regulated STAT3 expression, we used two STAT3-specific siRNAs to inhibit STAT3 expression to explore the role of STAT3 in the RBM3-induced EMT process. STAT3-siRNA#1 was used for further studies because of its remarkable knockdown efficiency on STAT3 expression (Figure 4E). Our data showed that STAT3 depletion abrogated RBM3-induced E-cadherin down-regulation as well as N-cadherin and Vimentin up-regulation (Figure 4F). These results indicate that RBM3 promoted EMT process through STAT3 signaling pathway.

RBM3 is an RNA binding protein that interacts with coding and non-coding RNAs to involve in regulating RNA splicing, mRNA localization, translation and stability.38,39 In order to investigate the exact mechanism by which RBM3 regulates STAT3 expression, we conducted RNA immunoprecipitation assay to explore the combination of RBM3 and STAT3. Our results showed that RBM3 bound directly to STAT3 mRNA by reverse transcription PCR analysis (Figure 4G) and quantitative real-time PCR assay (Figure 4H). For exploring the role of RBM3 on the stability of STAT3 mRNA, we treated cells with actinomycin D to inhibit total RNA synthesis,40 and found that down-regulation of RBM3 accelerated STAT3 mRNA degradation (Figure 4I). Furthermore, RBM3 expression was positively correlated with STAT3 expression in 374 HCC patients in the TCGA database (Figure 4J). These results demonstrate that RBM3 upregulates STAT3 expression by stabilizing STAT3 mRNA via binding to its mRNA.

MicroRNA-383 Inhibits RBM3 Expression by Binding to the 3ʹUTR of RBM3 mRNA

MicroRNAs are a class of highly conserved single-stranded non-coding RNAs that can bind to the 3ʹUTR of target genes to inhibit their translation or induce their degradation.41 In order to uncover the regulatory mechanism of RBM3 in HCC cells, we used the TargetScan database to make predictions and found that microRNA-383 could be complementary to the bases at positions 41–47 of the RBM3 3ʹUTR (UCUGAUC) (Figure 5A). The inhibition of microRNA-383 on RBM3 expression was further confirmed by Western blotting (Figure 5B). In addition, dual-luciferase reporter assay showed that microRNA-383 markedly inhibited luciferase activity in HepG2 cells transfected with the predicted RBM3 3ʹUTR sequence, but this inhibition was attenuated in HepG2 cells transfected with mutant RBM3 3ʹUTR sequence (Figure 5C). Furthermore, the suppression of EMT progression by microRNA-383 was very similar to that of RBM3 inhibition (Figure 5D). The TCGA database showed that microRNA-383 expression was extremely low in primary HCC tumors compared to normal healthy participants (Figure 5E). Further correlation analysis from TCGA database indicated that microRNA-383 was strongly negatively correlated with RBM3 (Figure 5F). These findings suggest that microRNA-383 is an upstream target of RBM3.

Figure 5 microRNA-383 suppresses downstream targets of RBM3 by binding to the 3’ UTR of RBM3. (A) Schematic diagram of the combination of microRNA-383 and RBM3 3ʹUTR. (B) Western blotting analysis of RBM3 expression in HepG2 cells transfected with nothing, pLKO.1-ns or pLKO.1-microRNA-383 plasmids. (C) Luciferase assays were performed to detect the binding activity of microRNA-383 and RBM3 3ʹUTR. Relative fold-change in luciferase activity is shown. (D) Western blotting analysis of RBM3 downstream targets (E-cadherin, MMP9 and VEGF) in HepG2-pLKO.1 cells and HepG2-pLKO.1-microRNA-383 cells. (E) Expression of microRNA-383 in normal participants (n=49) and primary LIHC tumors (n=369) from the TCGA database. (F) Correlation of microRNA-383 and RBM3 from TCGA database. Excluding samples with a miR-383 read of 0, a total of 128 LIHC samples were included in the statistics. Pearson correlation analysis was used. Results are the mean ± SEM (error bar) from three independent experiments. *P < 0.05, ***P < 0.001.

Inhibition of RBM3 Prolongs Survival of Mice Burdened with HCC Xenograft Tumors

To investigate the role of RBM3 on tumor progression in vivo, we constructed RBM3 overexpression cells (HepG2-pLNCX2-RBM3) (Figure 6A) and RBM3 knockdown cells (MHCC97H-RBM3-shRNA) (Figure 6B). Mice were injected with the indicated cells, and survival days were recorded. Kaplan–Meier curves of cumulative survival plots showed that although overexpression of RBM3 showed no effect on the survival of xenografted mice (Figure 6C), inhibition of RBM3 prolonged the survival days of xenografted mice from 44 to 60 days (Figure 6D). We collected the livers from mice and found that RBM3 overexpression resulted in a higher incidence of tumor metastasis, increased STAT3, N-cadherin and Vimentin expression, as well as decreased E-cadherin expression. In contrast, RBM3 inhibition suppressed the formation of tumor metastases and the expression of STAT3, N-cadherin and Vimentin while increasing the expression of E-cadherin (Figure 6E). These results suggest that suppression of RBM3 inhibits the EMT process and metastasis of HCC cells in vivo.

Figure 6 RBM3 inhibition prolongs the survival of mice burdened with HCC xenograft tumors. (A) Construction of HepG2 cells stably overexpressing RBM3. (B) The expression of RBM3 in MHCC97H-scrambled-shRNA cell and MHCC97H-RBM3-shRNA#2 cell was detected by Western blotting. (C) Kaplan–Meier curves of cumulative survival plot of nude mice injected with HepG2-pLNCX2 cells and HepG2-pLNCX2-RBM3 cells (n=6–7 mice per group). (D) Kaplan–Meier curves of cumulative survival plot of nude mice injected with MHCC97H-scrambled-shRNA cells and MHCC97H-RBM3-shRNA #2 cells (n=6–7 mice per group). (E) Representative gross images of livers with metastatic nodules (top), H&E-stained sections (second row) and IHC analysis of STAT3 and EMT markers (E-cadherin, N-cadherin and Vimentin) of the indicated HCC xenografts. Scale bar, 200 μm. P<0.05, statistically significant.


The unfavorable prognosis of cancer is largely attributed to the aggressiveness and metastasis of cancer cells. Increasing evidence indicated that RBM3 is dysregulated in various types of human cancers and plays a significant role in tumor cell proliferation and cancer patient outcome. Different tumor types exhibited opposing trends in RBM3 expression. Not only that, different cancer subtypes may hold discrepant RBM3 expression. In two subtypes of non-small cell lung cancer, the expression of RBM3 in adenocarcinoma was considerably higher than that in squamous cell carcinoma.42 The contradictory trend of RBM3 expression in different cancer types may be related to the complex tumor microenvironment. Using immunohistochemical assays, we found that RBM3 was significantly higher in HCC tissues than in adjacent non-tumor tissues. This finding was coincident with the analysis from TCGA database and the only two previous studies on RBM3 expression in HCC.43 In addition, RBM3 was also correlated with the prognosis of cancer patients. Some studies have reported that low expression of RBM3 was associated with poor prognosis in breast,44 bladder45 and colorectal cancers.29 Conversely, prostatic cancer patients with high RBM3 expression exhibited better survival,46 while survival in esophageal cancer was independent of RBM3 expression.47 Our data showed that HCC patients with low RBM3 expression exhibited higher overall survival compared to those with high RBM3 expression, which was also similar to the analysis of TCGA. These results indicate that high expression of RBM3 is an independent biomarker of poor prognosis in HCC.

Tumor cells could acquire aggressiveness through the EMT process, thus entering the circulation of the blood and lymphatic system, and metastasizing from the primary site to new tissues and organs, leading to incurable or even death of tumor patients.48 RBM3 has been reported to be positively associated with the metastatic process of various tumor cells.34,35,49 However, the biological effects of RBM3 on EMT, a developmental process by which tumor cells acquire pro-metastatic properties, have not been reported. Only one study has found that overexpression of RBM3 could upregulate the expression of Vimentin in neuroblastoma cells.49 We demonstrate for the first time that RBM3 could promote the EMT process in HCC cells. The transwell assay, a classic method for measuring tumor cell metastasis,50 showed that RBM3 accelerated the migration and invasion of HCC. Matrix metalloproteinases (MMPs) are well known for their role in degrading histological barrier during tumor metastasis.51 MMP2 and MMP9 could specifically degrade type IV collagen, a main component of the basement membrane, providing the possibility for tumor cells to metastasize into the vascular system.52 Vascular endothelial growth factor (VEGF) plays a crucial role in angiogenesis, which induces endothelial cell proliferation and creates suitable conditions for tumor cell metastasis.53 MMP2, MMP9 and VEGF were often used as metastatic markers of tumor progression.54,55 We found that RBM3 increased the expression of MMP2, MMP9 and VEGF.

STAT3 signaling pathway plays a key role in tumor-associated EMT process.56 As a kind of RNA-binding protein, RBM3 could modulate the expression of target genes by binding to their mRNAs.38 By blocking total mRNA synthesis using actinomycin D, our data suggested that RBM3 indeed bonds to STAT3 mRNA, thereby attenuating STAT3 mRNA degradation. Previous studies have demonstrated that microRNA-383 regulated proliferation and metastasis by binding to the 3ʹUTR of target genes in cholangiocarcinoma57 and colorectal cancer.58 The regulatory role of microRNA-383 on RBM3 is not yet understood. We found that the inhibitory effect of RBM3 on EMT in HCC cells may be modulated by microRNA-383.


Our results showed that RBM3 accelerated the migration and invasion of HCC cells and promoted the EMT process by upregulating pSTAT3 and total STAT3 expression (Figure 7). As the first study to explore the RBM3/STAT3/EMT axis, our results may provide new understanding and strategies for the metastasis and therapy of HCC.

Figure 7 Mechanism model of EMT-regulated by RBM3 in HCC. RBM3 promotes the EMT process by activating STAT3 signaling pathway in two ways. One is that RBM3 upregulates STAT3 expression by binding to STAT3 mRNA, and the other is that RBM3 increases the phosphorylation of STAT3. Moreover, RBM3 accelerates the migration and invasion of HCC cells, and upregulates MMP9, MMP2 and VEGF expression. Furthermore, as an upstream target of RBM3, microRNA-383 inhibits RBM3 expression by binding to the 3ʹUTR of RBM3 mRNA.


ARPC2, actin related protein 2/3 complex subunit 2; EMT, epithelial–mesenchymal transition; FBS, fetal bovine serum; HCC, hepatocellular carcinoma; MMP, matrix metalloproteinases; mRNA, message RNA; qRT-PCR, quantitative real-time PCR; RBM3, RNA binding motif protein 3; RT-PCR, reverse transcription polymerase reaction; shRNA, short hairpin RNA; siRNA, short interfering RNA; STAT3, signal transducer and activator of transcription 3; TCGA, the Cancer Genome Atlas; TAM, tumor-associated macrophages; UTR, untranslated region; VEGF, vascular endothelial growth factor.

Ethics Approval and Informed Consent

The study protocol was approved by the Ethics Committee of the First Affiliated Hospital of Third Military Medical University (Army Medical University), PLA (2015; Chongqing, China). Procedures for the collection of human samples, and their use for tissue arrays and gene expression studies were approved by the Ethical Committee of the Army Medical University (Chongqing, China). All the animal studies were performed strictly in accordance with the Animal Care Guidelines approved by the Laboratory Animal Welfare and Ethics Committee of Chongqing University (IACUC Issue No.: CQU-IACUC-RE-202111-002). The cell lines used in this study have been proven to meet the ethical requirements issued by the affiliated Chongqing University Cancer Hospital Ethics Committee (ethical code: CZLS2022038-A).

Consent for Publication

The content of this manuscript has not been published or submitted for publication elsewhere. All the authors have contributed significantly, and that all authors are in agreement with the content of the manuscript.


The authors wish to acknowledge Dr Ni Tang from Chongqing Medical University for providing HepG2 cell line.

Author Contributions

All authors made a significant contribution to the work reported, whether that is in the conception, study design, execution, acquisition of data, analysis and interpretation, or in all these areas; took part in drafting, revising or critically reviewing the article; gave final approval of the version to be published; have agreed on the journal to which the article has been submitted; and agree to be accountable for all aspects of the work.


This work was supported by the Natural Science Foundation of China [grant number 82172831]; the General Project of Chongqing Natural Science Foundation [grant number cstc2021jcyj-msxmX0642]; the Graduate Research and Innovation Foundation of Chongqing, China [grant number CYB21069]; the natural science foundation of Chongqing [grant number 2021ycjh-bgzxm0169; cstc2021jcyj-cxttX0002cstc]; and the China Postdoctoral Science Foundation [grant number 2019M663106].


The authors report no conflicts of interest in this work.


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