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USP21 promotes cell proliferation and metastasis through suppressing EZH2 ubiquitination in bladder carcinoma

Authors Chen Y, Zhou B, Chen D

Received 16 October 2016

Accepted for publication 23 November 2016

Published 7 February 2017 Volume 2017:10 Pages 681—689

DOI https://doi.org/10.2147/OTT.S124795

Checked for plagiarism Yes

Review by Single anonymous peer review

Peer reviewer comments 3

Editor who approved publication: Dr Tohru Yamada



Yong Chen,1 Bo Zhou,2 Daihui Chen1

1Department of Urology, The First Affiliated Hospital of Chongqing Medical University, 2Department of Urology, Daping Hospital, Third Military Medical University, Chongqing, People’s Republic of China

Abstract: Bladder cancer (BC) is the second most common malignant tumor of the urinary tract in the world. In this study, we found that ubiquitin-specific protease (USP21) was upregulated in BC and the ectopic expression of USP21 was closely associated with tumor size and metastasis. Moreover, patients with higher levels of USP21 had poorer survival rate. Multiple function analysis such as CCK-8, colony formation, wound healing, and transwell analysis indicated that USP21 regulated cell proliferation and metastasis in bladder carcinoma cell lines. We also found that USP21 could facilitate epithelial–mesenchymal transition. As EZH2 has been reported to promote cell metastasis in BC, our work identified that USP21 deubiquitinated EZH2 and stabilized it. Our data demonstrated that USP21 might play a crucial role in regulating BC progression and could provide a potential therapeutic strategy for BC.

Keywords: USP21, proliferation, metastasis, EZH2, EMT

Introduction

Bladder cancer (BC) has become the second most common malignant tumor of the urinary tract in the world.1,2 The urothelial carcinoma of the bladder is the most common type and accounts for ~95% of bladder carcinoma.3 Approximately 47% of transitional cell carcinoma recur as a nonlethal disease initially and ~9% will ultimately deteriorate to a muscle-invasive bladder carcinoma,1,2 which commonly occurs as metastasis and results in a high rate of death.3 In patients with invasive and metastatic bladder carcinoma, the traditional therapy slightly improves the 5-year survival rate.4 In the recent decade, although many targeted therapies have excelled in several cancers, such as gefitinib in lung carcinoma and sunitinib in kidney carcinoma, there is still no evidence of the efficiency of targeted therapeutic reagent for bladder carcinoma.1,2,5 Hence, finding and developing a more efficient therapeutic target is urgently needed. Meanwhile, it is crucial to investigate the molecular mechanism of BC development in detail and it is beneficial for finding a potential molecular target for bladder carcinoma therapy.

Protein ubiquitination involves multiple cellular processes, such as protein degradation, transcriptional activation or inhibition, and immune signal transduction pathways.68 The deubiquitinase (DUB) family has been found in at least 79 members in humans. There are five subfamilies of DUB: ovarian tumor, ubiquitin C-terminal hydrolases, ubiquitin-specific proteases (USPs), Josephin domain, and JAB1/MPN/MOV34 proteases (JAMM) family.9,10 For example, USP7 and USP10 were found to regulate p53 localization and function.11,12 USP15, USP21, and USP31 have been found to play key roles in the regulation of the NF-κB pathway.1318

USP21 belongs to the USPs family with a C-terminal catalytic DUB domain.19 USP21 has been regarded as an USP, which catalyzes the hydrolysis of ubH2A and activates transcriptional initiation.20 Moreover, USP21 regulates NF-κB signaling pathway or Th2-specific transcriptional factor GATA3 to modulate immune defense.18,21 Recently, one report indicated that USP21 promotes cell proliferation and invasion ability in human renal cell carcinoma.22 However, the role of USP21 in bladder carcinoma is still unknown.

In our study, we suggested that USP21 was an oncogene in bladder carcinoma because it had an obviously high expression in BC tissue samples and cell lines; moreover, high expression of USP21 was closely associated with tumor size, metastasis, and poor prognosis. In addition, several functional experiments indicated that USP21 not only promoted cell proliferation but also facilitated metastasis through regulation epithelial–mesenchymal transition (EMT) process. Furthermore, we identified that USP21 directly regulated the protein level of EZH2 through its DUB activity. These findings demonstrated that USP21 could enhance the progression of bladder carcinoma and provide a novel potential targets for bladder carcinoma therapy.

Methods and materials

Cell culture and transfection

Human-immortalized bladder urothelial cell line (SV-HUC-1) and human BC cell lines (T24 and 5637) were purchased from Shanghai Cell Bank (People’s Republic of China) and cultured in Roswell Park Memorial Institute 1640 medium (HyClone, Logan, UT, USA) supplemented with 1% penicillin–streptomycin (HyClone) and 10% fetal bovine serum (HyClone) at 37°C with 5% CO2.

Lipofectamine 2000 (Invitrogen, Carlsbad, CA, USA) was used to transfect cells according to the manufacturer’s protocol. In brief, DNA plasmids or USP21 siRNA were mixed with Opti-MEM medium and lipofectamine 2000 reagents, gently vortexed and stranded for 10 min at room temperature. After adding it to the cells, the medium was replaced 6 h later. The transfection efficiency was determined after 48 h.

Bladder tissue samples

The 62 adjacent normal bladder tissues and BC tissues were obtained from The First Affiliated Hospital of Chongqing Medical University during 2015–2016. All patients were aware that their tissue sample would be used for research prior to the study and had provided written informed consent for the samples to be used. Our research was approved by the Institutional Research Ethics Committee of The First Affiliated Hospital of Chongqing Medical University (FAHCM201503). All the tissue samples were collected and frozen in liquid nitrogen and stored at −80°C until processing.

Quantitative real time polymerase chain reaction (qRT-PCR)

RNeasy mini kit (Qiagen, Hilden, Germany) was used to extract total RNA from 40 mg tumor or normal tissue samples and cells and next cDNA was synthesized using PrimeScript RT reagent kit (Takara, Tokyo, Japan). For real-time qPCR, we used the 7500 Real-Time PCR System using SYBR® Green (Thermo Fisher Scientific, Waltham, MA, USA). The relative expression of mRNA was normalized against β-actin. All experiments were repeated at least three times.

Western blotting

After collecting and lysating cells in radio immunoprecipitation assay lysis buffer (BLKW, Fanke Biological Technology Co., Ltd, Shanghai, People’s Republic of China), we next measured protein concentrations with bicinchoninic acid assay kit (Pierce, Appleton, WI, USA). Equal amounts of protein were separated in 8% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and transferred proteins to polyvinylidene difluoride membranes (Millipore, Bedford, MA, USA). After blocking the membranes with 5% nonfat dry milk in Tris-buffered saline, Tween 20 (TBST) buffer, membranes were incubated with indicated primary antibodies at 4°C overnight. We washed the membranes with TBST buffer three times and incubated membranes with the horseradish peroxidase-labeled secondary antibodies at room temperature for 1 h. After washing the membranes with TBST buffer three times, the immunobands were visualized using the ECL reagents (ECL-Amersham, Piscataway, NJ, USA).

CCK-8 assays

The CCK-8 assay was used to determine the cell proliferation ability. After cells were transfected with vector, USP21, scramble siRNA (SCR), siUSP21 for 48 h, collected, and counted, 4×103 cells were placed in 96-well plates with 100 μL complete medium. Every 24 h, 10 μL CCK-8 were added in each well and then incubated at 37°C for 30 min. The absorbance was measured at 450 nm to assess the number of viable cells. All experiments were repeated at least three times.

Colony formation assay

Colony formation assay was used to determine the cell proliferation ability. After cells were transfected with vector, USP21, SCR, siUSP21 for 48 h, collected and counted, 3×103 cells were placed in six-well plates and incubated for 14 days with complete medium. The colonies were fixed with 10% formaldehyde and stained with 0.5% crystal violet. The colonies were counted under microscope. All experiments were repeated at least three times.

Transwell assay

Transwell assay was performed to detect the cell invasiveness ability. We used transwell chambers with 8 μm pores (Corning Costar, Corning, NY, USA) and Matrigel (BD, San Diego, CA, USA), and coated matrigel on chambers. After cells were transfected with vector, USP21, SCR, siUSP21 for 48 h, collected and counted, 2×103 cells were placed on top chambers with serum-free medium, whereas the lower chamber completes with the medium. After incubating cells at 37°C with 5% CO2 for 24 h, cotton swabs were used to remove the cells remained in the upper side, fixed and stained with 0.5% crystal violet. Cells were counted under microscope. All experiments were repeated at least three times.

Immunopurification and mass spectrometry (MS)

We overexpressed FLAG-USP21 in 5637 cells after 48 h of transfection, lysated whole cells, added 70 μL of 50% FLAG column, and incubated for 4 h at 4°C. After washing the column with phosphate-buffered saline (PBS) for three times, subsequently FLAG peptides (Sigma, New York, USA) were used to elute protein complex. The eluted solution was resolved on SDS-PAGE gel, stained gel with silver-stained kit (Pierce), and the special band were subjected to liquid chromatography–MS/MS sequencing.

Co-immunoprecipitation (co-IP)

For co-IP assays, we lysated whole cells by NETN lysis buffer (0.5 mM ethylenediaminetetraacetic acid [EDTA], 20 mM Tris-Cl [pH 8.0], 100 mM NaCl, 1× cocktail protease inhibitor, 0.5% Nonidet P-40 [NP-40]) and next incubated with 2 μg anti-USP21 or anti-EZH2 antibody and ~35 μL protein A-agarose beads at 4°C overnight. We washed the beads with NETN lysis buffer three times and eluted immunocomplexes via boiling in SDS sample buffer at least for 10 min. Finally, Western blotting was performed to identify protein.

GST pull-down analysis

We utilized 40 μL of 50% glutathione-Sepharose 4B beads (Solarbio, Beijing, People’s Republic of China) to immobilize GST fusion proteins in 500 μL binding buffer (5% glycerol, 100 mM KCl, 10 mM Hepes, 5 mM EDTA, 3 mM MgCl2, 0.5% CA630, and 3 mM MgCl2). We incubated GST fusion proteins and beads for 2 h at 4°C with rotation, washed beads with binding buffer for three times, and next resuspended and added 5 μL transcribed/translated EZH2, 4% bovine serum albumin and again incubated it for at least 90 min at 4°C with rotation. We washed beads with ice-cold PBS for three times and boiled the beads with 35 μL of 2× SDS loading buffer and resolved on 10% SDS-PAGE.

Statistical analysis

The GraphPad Prism 5 statistical software (GraphPad Software, La Jolla, CA, USA) was used to evaluate all the statistical analyses. The correlation between USP21 expression and patients’ clinical pathological characteristics was evaluated by chi-square test. The two-tailed Student’s t-test was used to assess the differences between two groups. The *P<0.05 was considered statistically significant. All experiments were repeated at least three times, and the values were shown as mean ± standard deviation.

Results

USP21 is highly expressed in BC tissues and cell lines and predicts poor prognosis of BC

To investigate the function of USP21 in BC, we first performed qRT-PCR to assess the expression level of USP21 in BC tissues and adjacent normal tissues. To our surprise, we found that USP21 was elevated in BC tissues compared with the adjacent normal tissues (Figure 1A). In addition, we further decipher the relationship of the expression level of USP21 with the pathological characteristics of BC. As shown in Table 1, high expression of USP21 was more closely correlated with high-grade BC than in low-grade tumors. Moreover, USP21 was found to be evaluated in high tumor stage, suggesting a potential relationship of tumor progression with the expression of USP21. Tumor size and lymphatic invasion also had association with high expression of USP21. This finding suggested that USP21 played an important role in tumor growth and metastasis in BC. According to the KM plot, we draw the survival curve. The survival curve revealed that the patient who had high expression of USP21 had a shorted survival time than the patient who had low expression of USP21 (Figure 1B). Together, our work revealed that the elevated expression of USP21 was closely correlated with the tumor aggressiveness, eventually resulted in poor prognoses. Subsequently, we determined the expression of USP21 in two BC cell lines (5637 and T24) and normal urothelial cell line (SV-HUC-1) as control. As shown in Figure 1C and D, both the mRNA level and the protein level of USP21 were highly expressed in BC cell lines, compared with SV-HUC-1.

Table 1 Clinicopathologic variables in 66 bladder cancer patients
Abbreviation: USP, ubiquitin-specific protease.

Figure 1 USP21 is highly expressed in BC tissues and cell lines, and it predicted poor prognosis of BC.
Notes: (A) The mRNA level of USP21 in adjacent normal tissue and tumor tissue was detected by qRT-PCR. These results revealed that USP21 has an obviously high expression in BC tissues. (B) According to Kaplan–Meier method of analysis, the correlation of USP21 with survival curves. (C) The mRNA level of USP21 in normal urothelial cell line (SV-HUC-1) and two BC cell lines (5637 and T24) was analyzed by qRT-PCR. *Compared with SV-HUC-1, P<0.05. (D) The protein level of USP21 in normal urothelial cell line (SV-HUC-1) and two BC cell lines (5637 and T24) was analyzed by Western blotting.
Abbreviations: BC, bladder cancer; HUC, human urothelial cell; USP, ubiquitin-specific protease.

Overexpression of USP21 promotes proliferation of BC cells

Our previous work indicated that high expression of USP21 was coordinated with tumor size, hence, we next investigated the involvement of USP21 in tumor progression. BC cell lines 5637 and T24 were transfected with vector, USP21 plasmid, SCR, or USP21 siRNA, and the expression of USP21 were detected. As shown in Figure 2A and B, the USP21 siRNA#1 was more efficient than USP21 siRNA#2, thus the subsequent experiments used USP21 siRNA#1. After transfection, we performed colony formation analysis and CCK-8 analysis to evaluate the functions of USP21 on cell proliferation. As shown in Figure 2C and D, ectopic expression of USP21 obviously increased the proliferation rates of 5637 and T24 cells, whereas the inhibition of USP21 expression significantly inhibited cell proliferation. Together, our findings demonstrated that USP21 promoted cell proliferation in BC.

Figure 2 Overexpression of USP21 promotes proliferation of bladder cancer cells.
Notes: (A) After transfected vector or USP21 or SCR or USP21 siRNA in 5637 and T24 cells according to the manufacture’s protocol, after 48 h of transfection, we extracted total RNA and performed qRT-PCR to detect mRNA level of USP21. (B) After transfected vector or USP21 or SCR or USP21 siRNA in 5637 and T24 cells according to the manufacture’s protocol, after 48 h of transfection, we collected and lysate whole cell, and performed Western blotting to detect protein level of USP21. (C) After overexpressed or silenced USP21 in 5637 and T24 cells, after 48 h of transfection, we placed 3×103 cells in six-well plates, incubated for 14 days, and the cell were stained with 0.1% crystal violet and counted. (D) After overexpressed or silenced USP21 in 5637 and T24 cells, we evaluated cell proliferation by CCK-8 assay on the indicated day. *Compared with vector, P<0.05; **Compared with vector, P<0.01.
Abbreviations: SCR, scramble siRNA; USP, ubiquitin-specific protease.

USP21 promotes migration and invasion ability of BC cells and facilitates EMT

Because lymphatic invasion also had association with high expression of USP21, we next performed wound healing analysis and transwell assay to determine the effect of USP21 in cell migration and invasion. As shown in Figure 3A, the cells with ectopic expression of USP21 migrated to ~100% of the wounded area, whereas the control groups migrated ~50% of the area. However, the cells with the inhibition of USP21 migrated to ~17% of the wounded area, whereas the control groups migrated ~50% of the area. The transwell assay revealed that the number of invaded cells was significantly increased in the USP21 overexpression group compared with the control group. The number of invaded cells was significantly increased in the USP21-depleted group compared with the control group (Figure 3B). These data revealed that USP21 not only promoted cell proliferation but also facilitated cell migration and invasion in BC. To further decipher the molecular mechanism of USP21 on BC cell migration and invasion, we aimed to identify whether USP21 regulated EMT. To verify our hypothesis, we assessed several EMT markers (E-cadherin, α-catenin, N-cadherin, and fibronectin) by qRT-PCR and Western blot. As expected, we found that E-cadherin and α-catenin were remarkably decreased and N-cadherin and fibronectin were obviously increased while overexpressing USP21 (Figure 3C). The contrary results were observed while USP21 was depleted (Figure 3D). To investigate whether USP21 regulated EMT through its DUB activity, we added MG132 in USP21-depleted cells. We found that the changes in epithelial and mesenchymal markers were obviously reverse (Figure 3D). These results suggested that USP21 facilitated BC cell metastasis through the promotion of the EMT process.

Figure 3 USP21 promotes migration and invasion ability of BC cells and facilitates EMT.
Notes: (A) After overexpressed or silenced USP21 in 5637 cells, 48 h after transfection, we performed wound healing analysis to assess the migration ability of BC cells and measured the wound closure distance at 0 and 24 h. Overexpression of USP21 promoted the migration ability of BC cells; however, the inhibition of USP21 decreased BC cells migration ability. (B) After overexpressed or silenced USP21 in 5637 cells, 48 h after transfection, we placed 2×103 cells on top chambers with serum-free medium, whereas the lower chamber with complete medium. After incubation, we fixed and stained cells with 0.5% crystal violet. Overexpression of USP21 promoted the invasion ability of BC cells; however, the inhibition of USP21 decreased BC cells invasion ability. (C) We overexpressed USP21 in 5637 cells and performed Western blotting and qRT-PCR to determine the function of USP21 in EMT process. Overexpression of USP21 decreased the expression of E-cadherin, whereas increased the expression of N-cadherin and fibronectin. (D) We knockdown USP21 in 5637 cells and incubated with or without MG132, a proteasome-specific inhibitor, and performed Western blotting and qRT-PCR to determine the function of USP21 in EMT process. Although cells were incubated without MG132, knockdown of USP21 increased the expression of E-cadherin, whereas decreased the expression of N-cadherin and fibronectin. However, while cells were incubated with MG132, it rescued the effect of USP21-depleted group. The magnification is 10×. *P<0.05, **P<0.01.
Abbreviations: BC, bladder cancer; EMT, epithelial–mesenchymal transition; SCR, scramble siRNA; USP, ubiquitin-specific protease.

Identifying USP21 as a EZH2-interacting protein

To further decipher the cellular functions of USP21, we performed affinity purification to detect USP21-interacting protein through MS. We found that there were 11 matching peptides from EZH2, which suggested that USP21 was associated with EZH2 in vivo. EZH2 was reported to have a high expression in BC and correlated with EMT.2326 Subsequently, we verified the interaction between USP21 and EZH2 through co-IP analysis. We performed co-IP assays in 5637 cell lysates with anti-USP21 antibody and then immunoblotting with antibodies against USP21 and EZH2. The results revealed that EZH2 was efficiently interacted with USP21 (Figure 4A). Reciprocal immunoprecipitation with anti-EZH2 and immunoblotting with EZH2 and USP21 also confirmed that USP21 interacts with EZH2 in vivo (Figure 4B). To further determine whether USP21 was directly interacted with EZH2, GST pull-down assay was performed. We expressed GST-USP21 in bacteria and then incubated with transcribed/translated FLAG-EZH2 (Figure 4C). The result showed that USP21 could interact with EZH2 directly in vitro. Together, our works suggested that USP21 was physically associated with EZH2 in vivo.

Figure 4 Identifying USP21 as a EZH2-interacting protein.
Notes: (A) Co-IP assay was performed to determine whether USP21 interacted with EZH2 in vivo. 5637 cell lysates were first immunoprecipitated with anti-USP21 antibody and then immunoblotted using USP21 and EZH2 antibodies. (B) Co-IP assay was performed to determine whether EZH2 interacted with USP21 in vivo. 5637 cell lysates were first immunoprecipitated with anti-EZH2 antibody and then immunoblotted using EZH2 and USP21 antibodies. (C) GST pull-down analysis was used to determine whether USP21 directly interacted with EZH2 in vitro. We expressed GST-USP21 in bacterially and then incubated with transcribed/translated FLAG-EZH2.
Abbreviations: co-IP, co-immunoprecipitation; USP, ubiquitin-specific protease.

USP21 stabilizes EZH2 through its ubiquitinase activity

As a DUB, USP21 was reported to deubiquitinate Gli1 and RIG-I;27,28 therefore, we assumed that USP21 may regulate EZH2 and some protein, which was associated with EMT. We first detected several transcriptional factors, such as snail, slug, and twist, but there were no correlation between USP21 and those transcription factors, whereas the protein level of EZH2 was significantly upregulated while overexpressing USP21 (Figure 5A), but the mRNA level of EZH2 had no change (Figure 5B). The above data indicated that USP21 may regulate EZH2 through its DUB activity. To verify our hypothesis, we ectopically expressed wild-type USP21 (wt-USP21) and mutant USP21 (mut-USP21/C221A), which were catalytically inactive in 5637 cells. As expected, EZH2 only increased in cells with overexpressed wt-USP21; however, EZH2 had no change in cells with overexpressed mutant USP21 (USP21/C221A; Figure 5C). Moreover, to determine whether mut-USP21/C221A had any effect on EZH2, because EZH2 had no interaction with mut-USP21/C221A. Co-IP assay was performed, as shown in Figure 5D, USP21/C221A could interact with EZH2. In addition, after the addition of MG132 in USP21-depleted 5637 cells, it was succeeded to rescue EZH2 protein from degradation (Figure 5E). Together, our works revealed that USP21 could stabilize EZH2 through its DUB activity.

Figure 5 USP21 stabilizes EZH2 through its ubiquitinase activity.
Notes: (A) After overexpressed USP21 in 5637 cells, 48 h after transfection, Western blotting was used to detect the expression of indicated protein. Overexpression of USP21 had no effect on the expression of snail, slug, and twist, but it increased the expression of EZH2. (B) After overexpressed USP21 in 5637 cells, 48 h after transfection, qRT-PCR was used to detect the mRNA level of indicated gene. Overexpression of USP21 had no effect on those genes. *P<0.05. (C) After overexpressed wide-type USP21 (wt-USP21) and mutant USP21 (mut-USP21/C221A) in 5637 cells, 48 h after transfection, Western blotting was used to detect the expression of EZH2. Overexpression of wt-USP21 increased the expression of EZH2, whereas the mut-USP21/C221A had no effect on the expression of EZH2. (D) After overexpressed mut-USP21/C221A in 5637 cells, co-IP analysis was used to assess whether mut-USP21/C221A could interact with EZH2. (E) We knockdown the USP21 in 5637 cells and incubated with or without MG132, and performed Western blotting to detect the protein level of EZH2. While cells were incubated without MG132, the expression of EZH2 was decreased in USP21-silenced cells. While cells were incubated with MG132, the expression of EZH2 had no change in cells in which USP21 was silenced.
Abbreviations: Co-IP, co-immunoprecipitation; USP, ubiquitin-specific protease.

Discussion

Accumulating evidence has suggested that USP21 is closely correlated to the development of cancer.18,21,22,29 Many studies have reported that USP21 deubiquitinated H2A and several nonhistone, such as Gli1 and RIG-I.27,28

In our study, we found that USP21 was highly expressed in BC and the expression of USP21 was associated with tumor size, metastasis, and poor survival rate. Several functional experiments, including colony formation analysis and CCK-8 analysis, suggested that overexpression of USP21 promoted cell proliferation and inhibition of USP21 suppressed cell proliferation. However, the details of molecular mechanism remain unknown. Cell proliferation is a complex cell process. It is regulated by multiple proteins, such as cyclin-D1, cyclin-E1, p16, p21, etc.3032 We assumed that USP21 might regulate some protein, which influenced those cell proliferations. Subsequently, transwell assay and wound healing assay confirmed that USP21 promoted BC cells metastasis. Furthermore, we found that USP21 also facilitated EMT. To further investigate the cellular function of USP21, we performed affinity purification to detect the USP21-interacting protein. To our surprise, EZH2, a component of PRC2 complex, was interacted with USP21. EZH2 has been reported to have a high expression in several tumors and promote cancer development. Here, co-IP and GST pull-down analysis demonstrated that USP21 interacted with EZH2. As a DUB, USP21 deubiquitinated and stabilized several proteins. Next, we detected whether USP21 regulated EZH2 through its DUB activity. The results showed that the ectopic expression of wt-USP21 could stabilize EZH2, but the overexpression of mut-USP21/C221A with inactive catalytic had no effect. Moreover, the inhibition of USP21 could decrease the expression of EZH2; while adding MG132, the expression of EZH2 was revived. Overall, our study suggests that USP21 stabilized EZH2 through its DUB activity. Meanwhile, USP21-facilitated EMT may also depend on its DUB activity.

In summary, our study demonstrated that USP21 was upregulated in bladder carcinoma and USP21 played an important function in tumor proliferation and metastasis. USP21 should be considered as a potential biomarker for BC.

Disclosure

The authors report no conflicts of interest in this work.


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