Prospective Application of Two New Pyridine-Based Zinc (II) Amide Carboxylate in Management of Alzheimer’s Disease: Synthesis, Characterization, Computational and in vitro Approaches

Introduction

Alzheimer’s disease (AD) is a severe brain abnormality that slowly destroys a person’s thinking ability, and memory loss occurs.¹ The person is unable to perform their everyday tasks, and physiological changes take place.² It results in paranoia, dementia, restlessness, anxiety, and aggression.³ Symptoms of Alzheimer’s disease first appeared in the mid-60s. It is ranked as the sixth leading cause of death in the US.⁴ Over 50 million individuals globally are thought to have dementia, with around 10 million instances identified every day.⁵

Several hypotheses are proposed regarding Alzheimer’s disease, including the Aβ amyloid hypothesis, Aβ amyloid oligomer hypothesis, Presenilin hypothesis, Calcium dysfunction hypothesis, lysosome hypothesis, and the Tau hypothesis.⁶ The Aβ Amyloid hypothesis is believed to be among the renowned hypotheses.⁷ Researchers also reveal that Alzheimer’s disease might result from an infection by oral bacteria Plasmodium gingivalis.⁸ Toxins produced by these bacteria are called gingipains that accumulate in the brain. The effects of Alzheimer’s disease vary from person to person and can be understood in three stages.^9,10 In the first stage, a patient undergoes forgetfulness, loses track of time, and becomes lost in familiar places. In the second stage, behavioral changes, feelings of loss at home, needing help for personal care, and difficult communication occur.¹¹ In the third stage of disease, a patient undergoes difficulty recognizing relatives and friends, an increased need for self-care, difficulty walking, unaware of time and place, and behavioral changes like aggression occur.¹² Several tests and investigative procedures are performed for the diagnosis of Alzheimer’s disease.^13,14 The peanut Butter test involves measuring the ability of people to smell peanut butter through each nostril.¹⁵ Research proved that people with AD were not able to smell peanut butter.¹⁶ A latest blood test that predicts Alzheimer’s disease 10 years before the disease occurs.^17,18 Researchers from NIOA focus on a protein in the brain, ie, IRS-I, that may signal the earliest stages of AD.^19,20 A decrease in the neurotransmitter acetylcholine ACh has been closely related to the prognosis of Alzheimer’s disease.²¹ The pathogenesis of Alzheimer’s disease has been strongly linked to a deficiency in brain neurotransmitter Acetylcholine.^22,23 Scientists and physicians need to learn more and more about Alzheimer’s disease and dementia, but in general still, no cure has been found.²⁴ Some medications lead to the symptomatic cure of disease like treating memory loss and confusion, including acetylcholinesterase enzyme inhibitors.²⁵ They protect from free radical poisonousness and injury generated by β amyloid and temper cytokine discharge through microglia.^26,27

Amide-based carboxylate derivatives play a significant part in the cure of this pathogenic illness.²⁸ They make strong interactions with biological receptors and undergo dual strategies by inhibiting the acetylcholinesterase to increase the quantity of acetylcholine and by performing as antioxidants.^18,29 Many drugs, including Tacrine, Donepezil, Rivastigmine, and Galantamine, are available.^30,31 Rivastigmine is a FDA-approved carbamate ester having amide linkage and a reversible cholinesterase inhibitor.³² One emerging intervention is metal carboxylates that have gained massive attention in past decades due to their fascinating structural design and their application in pharmaceuticals as drugs.³³ Complexes of metals like magnesium, copper, iron, bismuth, and zinc have been a target of research for the last two decades.³⁴ Many new moieties have been synthesized and tested for anti-microbial, anti-fungal, anti-cancerous, anti-leishmanial, anti-inflammatory, anti-bacterial, and other biological activities. It is proved to be having several effects.³⁵ For all of the above, the catalytic research result could be altered by altering the structure of synthesized compound electronic configuration and their target receptors.

Zinc predominates over other metals like copper and iron due to the 80–90% highly bound appearance of zinc with protein pools chelatables that could be visualized through chemical probes and histochemical analysis.³⁶ A specific concentration of zinc appeared as vesicles have predominant effects upon dopamine receptors, acetylcholine receptors, and sodium potassium voltage gated ion channels. ZnT-1 and ZnT-3 are responsible for the reuptake of zinc in vesicles, thus decreasing the chances of toxicity.³⁷ Zn(II) carboxylates are extraordinary in multiple ways as they form different mono or bidentate modes of interactions. These types of zinc complexes have made a huge number of coordination compounds that can be identified for biochemical purposes. The intercalation of pyridyl, pyrimidyl, pyrazoles, N-N bipyridines, piperidine, anthracillins, and substituted guanidine keep excellent potential to coordinate and their addition to the zinc complexes provide flexible physical and biochemical properties that cover a wide range of stability and activity. Many pyridyls, pyrimidyl, pyrazoles, N-N bipyridines, piperidine, anthracillins, and substituted guanidine have been intercalated with metals like zinc to enhance their metabolic functions and characteristics.^38,39 In this research, pyridine was attached. It has been observed that this pyridine attached as a heterocyclic compound gave the predominant effect⁴⁰ upon the catalytic properties and affinities to the binding site of receptors. Herein, the synthesis and characterization of two new compounds were carried out to recognize potential towards biological moieties, especially acetylcholinesterase, butyrylcholinesterase, and antioxidant activities.

Materials and Methods

Chemistry

Two carboxylic acid derivatives, namely Ligand 7 (HL⁷) and Ligand 8 (HL⁸), were synthesized in the laboratory by our following reported method.⁴¹ Zn(NO₃)₂.6H₂O, NaHCO₃, and pyridine were acquired from Sigma-Aldrich corporation (St Louis, MO; Analytical Grade) and used as such without further purification. Analytical grade solvents like dimethyl sulfoxide, ethanol, hydrochloric acid, methanol, glacial acetic acid, chloroform, and acetone were acquired from Merck (Germany) Ltd (Serono, Darmstadt). They were dried before use by the literature-reported method.⁴¹ Gallenkamp (UK) electrothermal apparatus was utilized to identify the melting points of the synthesized compounds. A Bruker Corporation USA (Billerica, MA) manufactured FT‐IR Spectrophotometer in the range of 4,000 to 400 cm⁻¹ was used to record the IR spectra. ¹H and ¹³CNMR spectra were documented at room temperature using deuterated dimethyl sulfoxide (DMSO-d₆) as an internal reference on a Bruker Advanced Digital (Switzerland) 300 MHz NMR spectrometer [δ 1H (DMSO)=2.5 ppm and δ 13C (DMSO)=40 ppm].

General Procedure for the Synthesis of the Sodium Salt of Ligand 7 and Ligand 8 (NaL⁷and NaL⁸)

These two starting compounds were synthesized and acquired by protocols as published in our previous research work (AAZ1-AAZ6).⁴² The sodium salts of HL⁷ and HL⁸ were prepared by drop-wise addition of sodium bicarbonate aqueous solution (2.5 mmol) into the ligands suspended solutions (2.5 mmol), as demonstrated in Scheme 1. Continuous stirring was carried out for 4–5 hours until the clear solution appeared. Completion of the reaction was confirmed by thin-layer chromatography. The resulting mixture was allowed to run on a high vacuum rotary evaporator to evaporate distilled water and left with NaL⁷and NaL⁸. Then this sodium salt of the ligands was further used for complex formation.

Scheme 1 Schematic representation of the synthesis of NaL7 and NaL8 and its zinc (II) complexes along with numbering pattern for NMR spectroscopy.

({3-[(2-Methoxy-5-Nitrophenyl) Carbamoyl] Propanoyl} Zincio 3-[(2-Methoxy-5-Nitrophenyl) Carbamoyl] Propanoate) Pyridine [Zn(L⁷)₂(Pyridine)] (AAZ 7)

To 7 mmol of an aqueous solution of NaL⁷, an immediate aqueous solution (3.5 mmol) of Zn(NO₃)₂.6H₂O was poured in a drop-wise manner with electric stirring followed by (3.5 mmol) pyridine methanolic solution, as shown in Scheme 1. The resulting mixture was allowed to run with stirring till precipitates appeared. The precipitate formed was filtered, thoroughly washed with distilled water to remove any unreacted starting material, and dried in a vacuum oven overnight. The final product was recrystallized from the mixture of chloroform and n-hexane (4:1) at ambient temperature.

Yield: 87%: M.P. 201–203°C: Mol. Wt.: 678.9 g/mol: Anal. Calc. (%) of C₂₇H₂₇N₅O₁₂Zn: Calculated (Obtained): C, 47.77 (47.36); H, 4.01 (3.98); N, 10.32 (10.42); O, 28.35 (28.28); Zn, 9.32 (9.638): FT-IR KBr (4,000–400) ν/cm⁻¹, 3,326 ν (NH); 1,641 ν (CO_amide); 1,519 ν (OCO_asym); 1330 ν (OCO)_sym; 515 ν (Zn-N); 431 ν (Zn-O); 189 (Δν): ¹HNMR [400 MHz, dimethyl sulfoxide DMSO –d6] δ (ppm): 2.61 (t, 2H, H2); 2.43 (t, 2H, H3); 9.50 (s, 1H, NH); 8.86 (d, 1H, H6); 7.90 (dd, 1H, H8); 7.17 (d, 1H, H9); 3.85 (s, 3H, H11); 8.67 (d, 1H, Hα); 8.29 (m, 2H, Hβ); 7.95 (d, 1H, Hγ):¹³C NMR [100 MHz, dimethyl sulfoxide, DMSO-d6] δ (ppm): 179.4 (C1); 34.1 (C2); 30.2 (C3); 172.7 (C4); 128.2 (C5); 112.5 (C6); 141.5 (C7); 114.9 (C8); 121.9 (C9); 153.2 (C10); 56.3 (C11); 153.7 (Cα); 119.2 (Cβ); 132.5 (Cγ).

({3-[(4-Methoxy-2-Nitrophenyl) Carbamoyl] Propanoyl} Zincio 3-[(2-Methoxy-5-Nitrophenyl) Carbamoyl] Propanoate Pyridine [Zn (L⁸)₂(Pyridine)] (AAZ8)

AAZ8 was synthesized utilizing the same procedure as described for AAZ 7, except NaL⁸was added in the stoichiometric ratio (7 mmol) instead of NaL⁷.

Yield: 85%: M.P. 219–221°C: Mol. Wt.: 678.9 g/mol: Anal. Calc. (%) for C₂₇H₂₇N₅O₁₂Zn: Calculated (Obtained): C, 47.77 (47.30); H, 4.01 (3.95); N, 10.32 (10.38); O, 28.37 (28.12); Zn, 9.37 (9.645): FT-IR KBr (4,000–400) ν/cm⁻¹, 3,331 ν (NH); 1,677 ν (CO_amide); 1,527 ν (OCO_asym); 1,345 ν (OCO)_sym; 508 ν (Zn-N); 436 ν (Zn-O); 182 (Δν): ¹HNMR [400 MHz, dimethyl sulfoxide DMSO –d6] δ (ppm): 2.59 (t, 2H, H2); 2.40 (t, 2H, H3); 9.46 (s, 1H, NH); 8.93 (d, 1H, H6); 7.88 (dd, 1H, H7); 7.14 (d, 1H, H9); 3.89 (s, 3H, H11); 8.65 (d, 1H, Hα); 8.33 (m, 2H, Hβ); 7.98 (d, 1H, Hγ), ¹³CNMR [100 MHz, dimethyl sulfoxide, DMSO-d6] δ (ppm): 179.5 (C1); 34.3 (C2); 30.3 (C3); 172.7 (C4); 127.1 (C5); 109.0 (C6); 139.2 (C7); 116.7 (C8); 119.5 (C9); 149.7 (C10); 56.8 (C11); 152.9 (Cα); 120.9 (Cβ); 129.9 (Cγ).

Anti-Alzheimer Potential

Acetylcholinesterase and Butyrylcholinesterase Inhibition Activities

To identify the cholinesterase inhibitory potential of both synthesized moieties AAZ7 and AAZ8, a series of dilutions in the order arranged 1,000 µg/mL to 15.62 µg/mL in dimethyl sulfoxide (DMSO) were synthesized and refrigerated to be used for further procedure.

Acetylcholinesterase and butyrylcholinesterase inhibitory potentials were characterized by acquiring acetylcholinesterase and butyrylcholinesterase enzyme from electric eel and equine serum, respectively, as reported in Ellman’s method.⁴³ This procedure was based on the formation of anionic radical 5-thio-2-nitrobenzoate. The breakdown of acetylcholine iodide would produce ATchi through acetylcholinesterase or destruction of Butyrylcholine iodide, BTchi through butyrylcholinesterase substrates provided along with enzymes. The complex formation followed the procedure with 5,5-dithio-bis-nitrobenzoic acid (DNTB) that gives yellowish color to be analyzed via spectroscopic measurements. The dilutions of newly-synthesized compounds AAZ7 and AAZ8 were blended in freshly prepared 0.1 M phosphate buffer saline (PBS). To obtain 0.03 units per milliliter of AChE and 0.01 units per milliliter of BChE, 518 U/mg of acetylcholinesterase and 12 U/mg of butyrylcholinesterase was dissolved in PBS. Furthermore, aliquots of 13.5 g/L (6%) KH₂PO₄, potassium dihydrogen phosphate, along with 17.4 g/L (94%) of K₂HPO₄ dipotassium hydrogen phosphate was synthesized and diversified. The substrates acetylcholine iodide and butyrylcholine iodide were taken in the concentration of 0.5 mM, which further combined with 0.2273 mM of DNTB to form a solution in water and was refrigerated for some time at 8°C.⁴⁴ Galantamine solution was synthesized by dissolving in methanol and taken as the positive control. After synthesizing all the required materials to carry out the procedure, the performance was done by taking each dilution of the synthesized compound, enzyme, and DNTB in the range of 1 mL, 50 µL, and 50 µL, respectively. These under investigation samples were allowed to incubate at 30°C in an incubator for 15 minutes. After the passage of this period, in each incubated dilution, a further 50 µL substrate solution was mixed, so enzymes’ action can nullify that substrate. These samples were run at 412 nm, and absorbance was measured while taking phosphate buffer saline and all other solvents as blank to not affect the results.⁴⁵

Galantamine absorbance was measured without the addition of any other reagent or sample. We then took two values of each dilution sample: an initial value and the other as the final value after 4 minutes. All readings were taken as triplicate as standard error mean (SEM). The formula’s final calculations were reported⁴³ by measuring the change in absorbance with change in the dilution. The concentration of dilutions of a synthesized compound that gives the inhibition of AChE and BChE by 50% was calculated. Utilized linear regression method by Microsoft excel was utilized to manipulate the inhibitory percentage against the diluted concentrations.^12,46,47

Anti-Oxidant Assays

DPPH Scavenging Assay

DPPH scavenging activity works on free radical scavenging aptitude of 1,1-diphenyl, 2-picrylhydrazyl DPPH, which calculates the antioxidant potential of both synthesized moieties AAZ7 and AAZ8 according to the procedure as explained.^46,48 A series of five dilutions ranging from 15.62 µg/mL to 1,000 µg/mL of the synthesized compound was synthesized. Each dilution (0.1 mL) was taken, which was allowed to add with 0.004% solution of DPPH previously diluted with methanol.⁴⁹

The dilutions were kept incubated for half an hour, and, after that, UV spectrophotometer absorbance was performed at 517 nm. Calculated antioxidant DPPH scavenging ability was calculated by taking the percentage of the ratio of absorbance (control) subtracting absorbance (sample) by absorbance (control) solely. Positive control was ascorbic acid. All the calculated readings were in triplicate. The Graph pad prism statistical approach was utilized to get the inhibitory curve and IC₅₀ values of both synthesized compounds and all dilutions.⁵⁰

ABTS Scavenging Assay

2, 2-azinobis [3-ethylbenzthiazoline]-6-sulfonic acid (ABTS) was utilized in this assay to calculate the scavenging ability of both synthesized chemical moieties.⁵¹ This procedure was based on the capability of compounds to knock out the ABTS negatively charged radical that declines the absorbance when measuring at 734 nm in a UV spectrophotometer. The assay was carried out by a procedure explained previously (reference). Then 245×10⁻³M solution of ABTS and 7×10⁻³ M solution of K₂S₂O₄ were synthesized and mixed homogeneously. In order to get the dark-colored ABTS cationic radical that would be utilized for assay, the mixture mentioned above was allowed to stand at midnight for 12–16 hours in a fully covered dark area at a typical temperature so that light would not disturb the formation of radicals. For further standardization of this solution, it was allowed to run on a spectrophotometer at 734 nm, and 0.01 M phosphate buffer solution was added until the absorbance came to 0.70. A prepared series of dilutions from 15.62 µg/mL to 1,000 µg/mL of synthesized compound was simultaneous. After the attenuation of 0.70 absorbances, standardized solution (3 mL) was added to each dilution series (300 µL). All the further procedures to check the scavenging ability of synthesized compounds after mixing of solutions should be carried out in 6 minutes to get the maximum results; otherwise, results may variate due to compatibilities. Results were generated by taking the percentage of the ratio of absorbance (control) subtracting absorbance (sample) by the absorbance (control). Positive control (ascorbic acid) values were taken at the same wavelength at which other dilutions were calculated. Results were performed, and data was manipulated as triplicates. Then 50% inhibitory potentials, ie, IC₅₀ values, were generated through graph pad prism updated software 5.00, and values were calculated.⁵²

Molecular Docking

Computational studies were carried out to analyze the binding interaction of synthesized compounds on the targeted AChE and BChE enzymes using Autodock Vina 1.1.2 intermitted with PyRx molecular docking software.⁵³ The three-dimensional structures of enzymes for acetylcholinesterase as PDB ID 1EVE and butyrylcholinesterase as PDB ID 1P0I were acquired through RCSB protein data bank and saved in PDB format.⁵⁴ These enzymes were modified after removal of water molecules and addition of polar hydrogen. The synthesized compounds AAZ7 and AAZ8 were prepared for docking by converting in PDB format by drawing on Marvin sketch and keeping it as a Mol.file. This file was reopened in another software called Bio viaDiscovery studio visualizer DSV and structures were modified by adding polar hydrogen and saved as PDB. Now both structures and proteins were ready for docking. All the procedures were followed as described in our previous reported research.⁴²

Molecular Dynamic Simulations

Molecular dynamic (MD) simulations are performed to identify the stable conformations and stability patterns of synthesized compounds with protein receptors which was carried out by iMODS that is a quick, adequate, authentic, and approachable way of determining the stability of proteins.⁵⁵ iMODS can be adopted to determine the variance, covariance map, eigenvalues, deformability, and elasticity network data. The best docking model of both ligands was selected and opened in Pymol with targeted protein and saved in pdb format as one molecule. Afterwards parameters were analyzed through iMODS.

Results and Discussions

Chemistry

The NaL (7 and 8) and synthesized complexes were characterized by FT-IR spectroscopy, which gives essential data about solid-state complexes. FT-IR data of the bands of our focus were those that were associated with νOH, νCO, νNH, νCOO, νZn-N, νZn-O of the NaL, and its complexes. The NaL formation was confirmed by OH peak’s disappearance, which appeared at 3,326 cm⁻¹ in free ligand, suggesting the sodium salt formation. Afterward, this NaL was utilized as initiative material for complex formation. The binding of the carboxylate moiety in complexes (AAZ7 and AAZ8) was confirmed by the presence of new stretching vibrations at 431 and 436 cm⁻¹, respectively, in the FT-IR spectrum, which can be attributed to Zn-O.⁵⁶ From the FT-IR data, binding patterns of carboxylate moiety with central zinc in complexes were measured through the difference of asymmetric (νOCO_asym) and symmetric (νOCO_sym) stretching vibrations (Δν = νCOO_asym - νCOO_sym)(5). From the FT-IR spectrum, the Δ(COO⁻) values calculated for NaL⁷ and NaL⁸are 256 and 248 cm⁻¹, respectively, while for complexes (AAZ7 and AAZ8), Δν is 189 and 182 cm⁻¹, respectively, showing carboxylate moiety bidentate mode with zinc in the solid phase.⁴¹ Additionally, the pyridine group attachment in both complexes (AAZ7 and AAZ8) was ascertained by the presence of some new stretching vibrations at 515 cm⁻¹and 508 cm⁻¹, respectively.⁵⁶ Furthermore, the ¹HNMR spectra for the NaL and its zinc (II) complexes (AAZ7 and AAZ8) were calculated in dimethyl sulfoxide by using Tetramethylsilane (standard). The ¹H-NMR is an important tool to give information about complex formation. In both complexes, positions 2 (H2) and 3 (H3) displayed aliphatic protons as a triplet, while there is no noteworthy change in NH signal that indicates the absence of nitrogen involvement in zinc coordination. Phenyl protons in both the complexes appear in the range of 7.22–8.89 ppm. The appearance of characteristic peaks in the range of 7.12–8.73 ppm confirmed the presence of a pyridine ring. While ¹³CNMR data of the NaL and its Zn(II) complexes (AAZ7 and AAZ8) taken in DMSO utilized Tetramethylsilane as an external standard. Here, an incremental method was adopted to assign each carbon atom chemical shift (δ) value of NaL and its Zn(II) complexes and compare them with the literature values. As compared to NaL precursors, the carbonyl frequencies (stretching) of complexes were downfield shifted. Due to the electron density decrease at the carbon atom attached to the electropositive zinc atom, it happens through an oxygen atom. These values justify the formation of complexes. However, minor changes were observed in the -CH₂-CH₂-, phenyl carbons, and C-N signals position after the complexes’ formation. The carboxylate carbon atom signals in NaL displayed at 176.0 ppm and 176.9 ppm after zinc complexation moved downfield to 179.4–179.8 ppm. Additionally, three pyridine signals appeared in 155.4–120.2 ppm and 153.7–119.2 ppm.

Acetylcholinesterase Inhibition Potential

Alzheimer's disease is a neurodegenerative disorder, characterized by dementia in which the brain's major part, ie, hippocampus, is affected along with the appearance of granulovacuolar degenerative bodies, amyloid β-plaques and neurofibrillary tangles.⁵⁷ Zinc as a trace element has its importance in management of Alzheimer's disease due to its occurrence in many parts of the brain like the olfactory bulb, cerebral neocortex, amygdala, as well as the hippocampus to serve major roles in catalytic, structural, behavioral, and biological functions and neuromodulators.³⁷ In an Acetylcholinesterase inhibition study, compound AAZ8 was found to be exhibiting more potential of 89.32±0.65, 87.65±0.87, 86.35±0.45, 85.52±0.14, 83.14±0.74, 82.97±0.98, and 80.45±0.67 enzyme inhibition as mean±SEM at the diluted concentration from 1,000 µg/mL to 15.62 µg/mL, respectively. The IC₅₀of AAZ8 was found to be 14 µg/mL, which was calculated through the dose-response curve at the same concentrations. Other compound AAZ7 showed inhibitory potential of 72.65±1.02, 71.97±0.25, 69.34±0.48, 68.65±0.63, 66.12±0.84, 65.32±1.31, and 63.17±0.58 AChE inhibition as mean±SEM at the diluted concentration ranging from 1,000 µg/mL to 15.62 µg/mL, respectively. The IC₅₀ of AAZ7 was calculated as 215 µg/mL. During this study, Galantamine was observed to be a positive control having the IC₅₀ of <0.1 µg/mL. All the results were collaborated and expressed in Table 1 and Figure 1.

Table 1 In vitro AChE Inhibitory Values of New Compounds AAZ7 and AAZ8

Figure 1 Graph pad profile of AAZ7 and AAZ8 as AChE inhibitors.

Butyrylcholinesterase Inhibitory Potential

In characterizing the BChE potential of the newly synthesized compounds AAZ7 and AAZ8, the latter was found to have a better perspective as the leading candidate and displayed more satisfactory results when compared with positive control Galantamine. At the dilutions from 1,000 µg/mL to 15.62 µg/mL, the percent inhibition was found to be 85.17±0.87, 84.13±0.45, 83.54±0.74, 81.64±1.04, 80.72±0.58, 79.31±0.67, and 77.93±0.78, respectively, as mean±SEM. Moderately, other synthesized compounds AAZ7 also give good results against the butyrylcholinesterase enzyme. Percentage inhibition was calculated to be 81.01±0.14, 79.47±0.58, 78.13±0.95, 76.25±0.31, 75.64±0.42, 74.95±0.13, and 72.42±0.27 as mean±SEM at different diluted concentrations in the range of 1,000 µg/mL to 15.62 µg/mL. The IC₅₀ of AAZ7 and AAZ8 were calculated as 31 µg/mL and 18 µg/mL, accordingly compared with the positive control showing an IC₅₀value of less than 0.1 µg/mL. Results were calculated by dose-response curve, and values were taken as triplicate. Graphs were plotted by the graph pad prism method. Results of both compounds are tabulated in Table 2 and expressed in Figure 2.

Table 2 In vitro BChE Inhibitory Values of New Compounds AAZ7 and AAZ8

Figure 2 Graph pad profile of AAZ7 and AAZ8 as BChE inhibitors.

DPPH Scavenging Assays

In DPPH scavenging assays, AAZ8 exhibited the highest scavenging impact in opposition to DPPH radicals with 83.97±0.12% radical inhibitory potential at a dilution of 1,000 µg/mL. Furthermore at the diluted concentration ranging from 500 µg/mL to 15.62 µg/mL, the percentage inhibition was determined to be 81.69±0.45%, 79.54±0.63%, 77.85±0.39%, 75.68±0.97%, 73.47±0.26%, and 69.87±0.59%, respectively, as mean±SEM. An IC₅₀of AAZ8 was calculated as 35 µg/mL, whereas AAZ7 showed 74.16±0.77% inhibition of DPPH radicals at 1,000 µg/mL concentration with IC₅₀ of 53 μg/mL. These two have been the mightiest fractions among all samples. Other fractions displayed adequate and concentration-dependent inhibitory effects against free DPPH radicals. Positive control was ascorbic acid having an IC₅₀ of less than 0.1 µg/mL. Values were calculated as triplicate, and their mean was suggested as the final value for further calculations. Results are expressed in Table 3 and Figure 3.

Table 3 In vitro DPPH Free Radical Scavenging Activity of New Compounds AAZ7 andAAZ8

Figure 3 Graph pad profile of AAZ7 and AAZ8 as DPPH free radical scavengers.

ABTS Scavenging Assays

ABTS scavenging potential of synthesized compounds AAZ7 and AAZ8 are summarized in Table 4. Results indicated that AAZ8 has more potential towards ABTS inhibition and displayed 81.35±0.35%, 79.27±0.64%, 78.36±0.58%, 77.45±0.87%, 73.62±0.29%, 70.28±0.36%, and 65.39±0.89% inhibition as mean±SEM at the diluted concentration ranging from 1,000 µg/mL to 15.62 µg/mL, respectively, as given in Table 4 and having the IC₅₀ of 29 µg/mL. In comparison, AAZ7 also showed a moderate percentage inhibitory potential of 80.45±1.02% at the highest dilution of 1,000 µg/mL. The inhibitory potential of a 50% population was calculated as 110 µg/mL. Values were carried out by the graph pad prism method, and readings were taken as triplicates. Results are demonstrated in Table 4 and Figure 4.

Table 4 In vitro ABTS Free Radical Scavenging Activity of Newly Synthesized AAZ7 and AAZ8

Figure 4 Graph pad profile of AAZ7 and AAZ8 as ABTS free radical scavengers.

Docking Studies

For better understanding of synthesized chemical moieties behavior as enzyme inhibitor, docking studies were carried out. Both synthesized compounds AAZ7 and AAZ8 exhibited promising results by showing the binding energies in AChE as −10.1 and −9.8 kcal/Mol, respectively, in their best postures. In BChE, they displayed −8.7 and −8.9 kcal/Mol, respectively. These energies indicated that both of these ligands have excellent potential to act as an enzyme inhibitor. Furthermore, when 3d binding of both compounds was analyzed, they gave excellent interaction inside active site of AChE and BChE enzymes. Figure 5 displays AAZ7 inside the binding pocket of acetylcholinesterase. It has three conventional hydrogen bonds between the carboxylate group and methoxy group on one side and ARG A: 289, PHE A: 288, and TYR A: 121 on the other side with the bond distance of 2.12Å, 2.27Å, and 1.98 Å, respectively. Another important type of bonding interaction was observed as pi-pi-T-shaped that appeared between TRP A: 279 and TYR A: 334 with that of heterocyclic pyridine ring. Carbon hydrogen bond also prompt to have the affinity in between ASP A: 72 and benzene ring.

Figure 5 Docking model of AAZ7 interacting with acetylcholinesterase AChE enzyme. (A) Structure of synthesized compound AAZ7 (brown) at a specific site inside protein cartoon model (white). (B) Three dimensional display of AAZ7 (brown) with amino acid residue (blue) at the binding site with bond distance shown. (C) Two-dimensional visualization of AAZ7 at the enzyme binding site with bonding patterns and bond distance shown.

When analyzing the results of AAZ7 inside butyrylcholinesterase enzyme as depicted in Figure 6, outcomes were more realistic and good, due to the presence of multiple bonding patterns. Four conventional hydrogen bonds were appeared with SER A: 72, GLN A: 71, TYR A: 128, and THR A: 120 with a bond distance of 2.57Å, 2.09Å, 2.48Å, and 2.53Å, respectively. Other bonds include π-π-T-shaped and π-π stacked in between TRY A: 332 with benzene ring and TRP A; 231 and PHE A: 329 with heterocyclic pyridine ring that indicated the important role of the pyridine ring in inhibition of enzyme and performing biological functions. THR A: 284, TRP A: 82, and ASN A: 83 were found to have a carbon hydrogen bonding pattern.

Figure 6 Docking model of AAZ7 interacting with butyrylcholinesterase BChE enzyme. (A) Structure of synthesized compound AAZ7 (red) at a specific site inside protein cartoon model (white). (B) Three- dimensional display of AAZ7 (red) with amino acid residue (green) at the binding site with bond distance shown. (C) Two-dimensional visualization of AAZ7 at the enzyme binding site with bonding patterns and bond distance shown.

When analyzing the AAZ8 inside the binding pocket of acetylcholinesterase enzyme as shown in Figure 7, multiple interactions give a strong potential of this chemical moiety to get attached with enzyme. Bond lengths of all bonds lie between 2–5 Angstrom which indicated the strength of bonds. Phenyl ring gave pi-pi stacked and pi-pi-T shaped interaction with PHE A: 330 and PHE A: 331. Strong conventional hydrogen bonds were observed with TYR A: 121, PHE A: 288, and GLY A: 119. The enzyme inhibition was further supported by the Pi-cation interaction that was found between TRP A: 279 and pyridine ring that authenticates the role of the pyridine ring in biological activity. Other amino acid residues include TRP A: 84, GLU A: 199, and HIS A: 440.

Figure 7 Docking model of AAZ8 interacting with acetylcholinesterase AChE enzyme. (A) Structure of synthesized compound AAZ8 (blue) at a specific site inside protein cartoon model (yellow).(B) Three- dimensional display of AAZ7 (blue) with amino acid residue (light blue) at the binding site with bond distance shown. (C) Two-dimensional visualization of AAZ7 at the enzyme binding site with bonding patterns and bond distance shown.

When analyzing the binding pattern of AAZ8 with butyrylcholinesterase, the results indicate the presence of three conventional hydrogen bonds, two pi-pi stacked bonds, one carbon hydrogen bond, one amide-pi stacked bond, and one pi-anion bond as given in Figure 8. The insight visualization of bonding pattern showed GLY A: 116, GLY A: 117 and ASN A: 289 involved in conventional hydrogen bond carboxylate group and methoxy side chain. Benzene moiety gave important pi-anion interaction with ASP A: 70 and benzene ring with bond distance of 4.16 Å.

Figure 8 Docking model of AAZ8 interacting with butyrylcholinesterase BChE enzyme. (A) Structure of synthesized compound AAZ8 (green) at a specific site inside protein cartoon model (purple). (B) Three- dimensional display of AAZ8 (green) with amino acid residue (purple) at the binding site with bond distance shown. (C) Two-dimensional visualization of AAZ8 at the enzyme binding site with bonding patterns and bond distance shown.

MD Simulations Analysis

To investigate the thermodynamic parameters utilizing molecular dynamic simulation is one of the powerful tool to determine the ligand protein stability and flexibility. The NMA normal mode analysis of synthesized complexes are explained in Figures 9A and 10A. Through the molecular dynamics simulations study, it was calculated that AAZ7 as a ligand protein complex has the eigenvalue of 3.041581e-04 and AAZ8 has the eigenvalue of 3.046853e-04 that represents high stability of both complexes inside protein, as given in Figures 9B and 10B. The variance maps indicate the high value of cumulative variance in comparison with individual variance digits as given in Figures 9C and 10C. Elastic map and covariance also gave promising results, as given in Figure 9Ds and E and 10D and E. Overall the two synthesized ligands AAZ7 and AAZ8 have the potential to inhibit cholinesterase enzymes.

Figure 9 Results of molecular dynamics simulations of AAZ7 docked complex with BChE. (A) NMA mobility, (B) eigenvalues, (C) variance (red color represents individual variance in comparison with green color representing cumulative variance), (D) covariance map correlated in red color, uncorrelated in white color and blue color giving correlated, (E) elastic region as more grey area represents more hard regions.

Figure 10 Results of molecular dynamics simulations of AAZ8 docked complex with AChE. (A) NMA mobility, (B) eigenvalues, (C) variance (red color represents individual variance in comparison with green color representing cumulative variance), (D) covariance map correlated in red color, uncorrelated in white color and blue color giving correlated, (E) elastic region as more grey area represents more hard regions.

Conclusions

We summarized our results as we have successfully synthesized two novel carboxylates containing amide zinc (II) complexes (AAZ7 and AAZ8) linked with the heterocyclic pyridine ring. The synthesized compounds were characterized through FT-IR, 1H_NMR, 13C_NMR, and elemental analysis to confirm the formation of complexes. The designed compounds showed promising in vitro anticholinesterase and antioxidant activities. Compound AAZ8 proved to have excellent potential by showing IC₅₀ values of 215 µg/mL and 18 µg/mL against AChE and BChE, respectively. Both the compounds displayed antioxidant potential indicating the free radical scavenging ability of synthesized compounds. Molecular docking studies confirmed the ligand-receptor binding interactions with excellent negative binding energies. Molecular kinetic simulations studies were performed that supported the stability and flexibility of synthesized chemical moieties with targeted proteins. The current study indicates that AAZ8 is a promising candidate and can become a valuable approach for managing AD.