FGF23 modulates the effects of erythropoietin on gene expression in renal epithelial cells
Authors Yashiro M, Ohya M, Mima T, Ueda Y, Nakashima Y, Kawakami K, Ishizawa Y, Yamamoto S, Kobayashi S, Yano T, Tanaka Y, Okuda K, Sonou T , Shoshihara T, Iwashita Y, Iwashita Y , Tatsuta K, Matoba R, Negi S, Shigematsu T
Received 29 November 2017
Accepted for publication 20 February 2018
Published 4 April 2018 Volume 2018:11 Pages 125—136
Checked for plagiarism Yes
Review by Single anonymous peer review
Peer reviewer comments 2
Editor who approved publication: Professor Pravin Singhal
Mitsuru Yashiro,1 Masaki Ohya,1 Toru Mima,1 Yumi Ueda,2 Yuri Nakashima,1 Kazuki Kawakami,1 Yohei Ishizawa,2 Shuto Yamamoto,1 Sou Kobayashi,1 Takurou Yano,1 Yusuke Tanaka,1 Kouji Okuda,1 Tomohiro Sonou,1 Tomohiro Shoshihara,1 Yuko Iwashita,1 Yu Iwashita,1 Kouichi Tatsuta,1 Ryo Matoba,2 Shigeo Negi,1 Takashi Shigematsu1
1Department of Nephrology, Wakayama Medical University, Wakayama, Japan; 2DNA Chip Research Inc., Minato, Japan
Background: FGF23 plays an important role in calcium–phosphorus metabolism. Other roles of FGF23 have recently been reported, such as commitment to myocardium enlargement and immunological roles in the spleen. In this study, we aimed to identify the roles of FGF23 in the kidneys other than calcium–phosphorus metabolism.
Methods: DNA microarrays and bioinformatics tools were used to analyze gene expression in mIMCD3 mouse renal tubule cells following treatment with FGF23, erythropoietin and/or an inhibitor of ERK.
Results: Three protein-coding genes were upregulated and 12 were downregulated in response to FGF23. Following bioinformatics analysis of these genes, PPARγ and STAT3 were identified as candidate transcript factors for mediating their upregulation, and STAT1 as a candidate for mediating their downregulation. Because STAT1 and STAT3 also mediate erythropoietin signaling, we investigated whether FGF23 and erythropoietin might show interactive effects in these cells. Of the 15 genes regulated by FGF23, 11 were upregulated by erythropoietin; 10 of these were downregulated following cotreatment with FGF23. Inhibition of ERK, an intracellular mediator of FGF23, reversed the effects of FGF23. However, FGF23 did not influence STAT1 phosphorylation, suggesting that it impinges on erythropoietin signaling through other mechanisms.
Conclusion: Our results suggest cross talk between erythropoietin and FGF23 signaling in the regulation of renal epithelial cells.
Keywords: FGF23, STAT1, PPARγ, DNA microarray, bioinformatics analysis, nonprotein-coding gene
FGF23 is produced by osteoblasts when they sense an increase in the serum concentration of phosphate.1 FGF23 produced by the osteoblasts induces renal epithelial cells to promote phosphorus diuresis. Simultaneously, FGF23 suppresses the intake of phosphate in the intestinal tract by inhibiting production of the active form of vitamin D in renal epithelial cells.2–4 Moreover, FGF23 plays an important role in the onset of chronic kidney disease–mineral and bone disorder.5 Thus, FGF23 plays important roles in Ca–P metabolism. Recently, new physiological roles have been found for FGF23, such as the commitment of myocardium enlargement,6 proliferation of chondrocytes,7 infiltration of neutrophils8 and impairment of B lymphopoiesis.9 Furthermore, we have reported that FGF23 is expressed in the spleen, which plays important roles in the immune system, and the regulation of FGF23 expression in the spleen differs from that of the bone.10 In the spleen, plasmacytoid dendritic cells produce FGF23 and mature B cells express the FGF23 coreceptor, Klotho, suggesting that FGF23 plays an immunological role.11 These results suggest that, in renal epithelial cells, FGF23 might have biological roles in addition to Ca–P metabolism. However, such additional roles have not been identified before now. It has been thought that they would be difficult to determine using conventional methods.
In vitro experiments are required to analyze the roles of FGF23 other than Ca–P metabolism because the serum level of calcium and phosphate would be changed by FGF23 administration in vivo and would subsequently influence gene expression in other tissues, including renal tubule epithelial cells. The mouse renal tubule epithelial cell line, mIMCD3, is a representative cell line which is frequently used for experiments relating to renal tubule epithelial cells and has been reported to express Klotho.12 We confirmed the expression of both Klotho and FGF receptor 1 in mIMCD3 cells (Figure S1), demonstrating that this cell line is suitable for investigating the effects of FGF23. The expression of erythropoietin receptor in mIMCD3 cells was as same as that of erythroblast.
Recently, using exhaustive gene expression analyses with DNA microarrays followed by bioinformatics analysis, new pathogenetic mechanisms have been identified in diseases such as systemic lupus erythematosus13 and systemic juvenile idiopathic arthritis.14 New abnormalities and biological functions were clarified, which could not be achieved using conventional methods. To identify new biological roles of FGF23 in renal epithelial cells, we comprehensively analyzed gene expression in mIMCD3 cells following stimulation with FGF23. We used DNA microarrays and bioinformatics tools to identify candidate transcription factors for regulating differentially expressed genes.
Cell line and cell culture
mIMCD3 cells were purchased from Riken Cell Bank (Tsukuba, Japan) and cultured in Dulbecco’s modified Eagle’s medium/F12 medium supplemented with 10% fetal bovine serum (SH30079.03; Hyclone, Logan, UT, USA) at 37°C under 5% CO2.
Extraction of RNA from mIMCD3 cells with or without FGF23 stimulation
mIMCD3 cells were stimulated with FGF23 for 4 h in order to identify not only those genes whose expression is induced by FGF23 but also those whose expression is suppressed through inhibitory mechanisms, such as microRNAs. The cells were cultured with or without 10 ng/mL FGF23 (2629FG; R&D Systems, Minneapolis, MN, USA)15 for 4 h. Total RNA was then extracted using TRIzol reagents (Thermo Fisher Scientific, Waltham, MA, USA) according to the manufacturer’s protocol. RNA was extracted from five replicate cultures in each treatment group. The concentration of extracted RNA was measured, and the quality was evaluated by electrophoresis.
Analysis of gene expression using DNA microarrays
To minimize variations in gene expression between replicate cultures, the RNA for microarray analysis was made by mixing 1 mg from each of the five replicates stimulated with FGF23. RNA from the five replicates not treated with FGF23 was mixed in the same way to make a control. The concentration and quality of these RNA preparations were determined using a Nanodrop ND-1000 spectrophotometer (Thermo Fisher Scientific) and an Agilent Bioanalyzer (Agilent Technologies, Santa Clara, CA, USA), as recommended by Agilent Technologies. Linear T7-based amplification was performed using 100 ng of each RNA preparation. Total RNA was amplified and labeled with Cy3 or Cy5 using an Agilent Low Input Quick Amp Labeling Kit, Two-color (Agilent Technologies), following the manufacturer’s instructions. Yields of cRNA and the dye-incorporation rate were measured using a Nanodrop ND-1000 spectrophotometer and an Agilent Bioanalyzer. Hybridization was performed according to the Agilent 60-mer oligo microarray processing protocol, using the Agilent Gene Expression Hybridization Kit (Agilent Technologies). The labeled cRNA probes were hybridized overnight (17 h at 65°C) to Agilent Whole Mouse Genome oligo microarrays 8 × 60 K (Design ID: 028005). After washing, the microarrays were scanned using a G2505C Microarray Scanner (Agilent Technologies), and signal values were calculated using Agilent software. The median and SD of the background fluorescence level were calculated, and the probe for which the fluorescence intensity was less than the median background plus 2 × SD was considered to be not expressed. The Cy3/Cy5 ratios of all spots on the microarrays were normalized using the global ratio median normalization method. Changes in gene expression were quantified using the ratio of fluorescence values with FGF23 stimulation to those without FGF23 stimulation, obtained by calculating the geometric mean of the Cy3/Cy5 ratio from two microarray hybridization experiments. Upregulated genes were identified as those showing a with-FGF23-to-without-FGF23 ratio of more than 1.5, and for which both fluorescence values were more than 30. This meant that the differences in fluorescence values with and without FGF23 were more than the background SD, 11. Downregulated genes were identified as those showing a with-FGF23-to-without-FGF23 ratio of less than 0.7, and again showing fluorescence values of more than 30 both with and without FGF23 stimulation.
Bioinformatics analysis was conducted using oPOSSUM, version 3.0 (http://opossum.cisreg.ca/oPOSSUM3) to identify transcription factors that putatively regulate the differentially expressed genes.
Effects of FGF23 on gene expression induced by erythropoietin
mIMCD3 cells, on which the expression of EpoR was confirmed (Figure S1) and whose expression level of EpoR was as same as that of erythroblasts, were stimulated with 1 U/mL erythropoietin (959ME; R&D Systems),16 with or without 10 ng/mL recombinant FGF23 protein, for 2 or 4 h at 37°C. After stimulation, cells were washed twice with medium. RNA was extracted using TRIzol reagents, as described above, and cDNA was synthesized from total RNA using a Transcriptor First-Strand cDNA synthesis Kit (Roche Diagnostics, Mannheim, Germany). qPCR assays for Akt1s1 (Mm01203150_g1), Ak4 (Mm00784745_g1), Ankrd37 (Mm01344843_g1), Bnip3 (Mm01275600_g1), Cadps2 (Mm01137059_g1), Krt17 (Mm00495207_g1), Mgarp1 (Mm00471236_g1), Mt1 (Mm00496660_g1), Mt2 (Mm00809556_g1), Pdk1 (Mm00554300_g1), Pygl (Mm01289790_g1), Rgs16 (Mm00803317_g1), Selenbp (Mm01611432_g1), Slc16a3 (Mm00446102_g1) and Tmprss6 (Mm0055119_g1) were performed on an ABI 7500 System (Thermo Fisher Scientific) using TaqMan Gene Expression Assays (Thermo Fisher Scientific). Gapdh (Mm99999915_g1; Thermo Fisher Scientific) was used as a housekeeping gene to normalize expression values.
Western blot analysis of phosphorylated STAT1
mIMCD3 cells were stimulated with 5 U/mL erythropoietin,17 with or without recombinant FGF23 protein at a concentration of 10, 20 or 50 ng/mL, for 15 min at 37°C. After stimulation, cells were washed twice with medium. After protein extraction using M-PER (Thermo Fisher Scientific) and a protein inhibitor, the protein concentration was determined using a Pierce BCA Protein Assay Kit (Thermo Fisher Scientific). A total of 10 µg protein and STAT1 control cell extracts (9173; Cell Signaling Technology, Danvers, MA, USA) were applied to each lane of polyacrylamide electrophoresis gels. After electrophoresis, proteins were transferred onto PVDF membranes using the Ezblot (AE-1460; ATTO Corp, Tokyo, Japan) reagent and a semi-dry blotting unit (WSE-4110 PoweredBLOT One; ATTO Corp) according to the manufacturer’s instructions. Membranes were then blocked for 1 h at room temperature in a commercial blocking reagent (PVDF Blocking Reagent for Can Get Signal®; Toyobo, Osaka, Japan). After three washes with TBST, membranes were incubated with a rabbit anti-phospho-STAT1 antibody (7649S; Cell Signaling Japan, Tokyo, Japan) diluted in immunoreaction enhancer solution (1:1000, Can Get Signal Solution 1; Toyobo), overnight at 4°C. The membranes were washed three times with TBST and then incubated with horseradish peroxidase-conjugated donkey anti-rabbit IgG (ab16284; Abcam, Cambridge, UK) diluted in immunoreaction enhancer solution (1:5000, Can Get Signal Solution 2; Toyobo) for 1 h at room temperature. Membranes were then washed in TBST and processed following an enhanced chemiluminescence protocol (ECL Prime Western Blotting Detection Reagent; GE Healthcare, Little Chalfont, UK). Antibody binding was detected using a WSE-6100 LuminoGraph chemiluminescence imaging system (ATTO Corp), and was quantified using the CS Analyzer version 1.0.2 (ATTO Corp). Membranes were stripped using EzReprobe (ATTO Corp) and reprobed for GAPDH (1:1000, SC-25778; Santa Cruz Biotechnology, Dallas, TX, USA) as a protein loading control.
ERK mediation of the suppression of gene expression by FGF23
An ERK inhibitor, FR180204,18 was purchased from Cayman Chemical (15544; Ann Arbor, MI, USA). mIMCD3 cells were stimulated with 1 U/mL erythropoietin and/or 10 ng/mL FGF23 with or without 1 µM FR180204, for 2 h. After stimulation, RNA was extracted and gene expression was analyzed using qPCR, as described above.
All values are expressed as the means ± SD, and statistical significance was determined using the Kruskal–Wallis analysis of variance followed by the post hoc Steel–Dwas test. All statistical computations were performed using JMP version 13.0 (SAS Institute Inc, Cary, NC, USA). p < 0.05 was considered statistically significant.
Microarray analysis of gene expression induced by FGF23
DNA microarray analysis revealed that 26 genes were differentially expressed in mIMCD3 cells following FGF23 stimulation, compared with the same cells without FGF23 stimulation. The microarray data can be found on Gene Expression Omnibus (https://www.ncbi.nlm.nih.gov/geo/, GSE100847). Eight out of 26 genes were upregulated, and the remaining 18 were downregulated. Three out of eight upregulated genes were protein-coding genes (Table 1), and the remaining five were nonprotein coding (Table 2). Fifteen out of 18 downregulated genes were protein coding (Table 1), and the remaining three were nonprotein coding (Table 2). Three out of 15 downregulated protein-coding genes were identified as RIKEN genes, for which we could not perform expression analysis using qPCR.
Table 1 Differentially expressed protein-coding genes following FGF23 stimulation
Table 2 Differentially expressed noncoding genes following FGF23 stimulation
Transcription factors putatively regulating differentially expressed genes
To identify mechanisms regulating gene expression, we performed a bioinformatics analysis to identify transcription factors with putative binding sites in the genes that were differentially expressed following FGF23 stimulation. Among the transcription factors with binding sites in FGF23-upregulated genes (Table 3), PPARγ and STAT3 were of greatest interest because they are known to be active in renal tubule epithelial cells. PPARγ mediates vitamin D activity in these cells.19 STAT3 mediates the intracellular signaling of erythropoietin,20 which is known to have effects on renal tubule epithelial cells, as well as protective effects on renal injury in patients with chronic kidney diseases.21 The other transcription factors with binding sites in FGF23-upregulated genes are not known to act in renal tubule epithelial cells.
Table 3 Transcription factors putatively involved in the upregulation of genes following FGF23 stimulation
Among the transcription factors with binding sites in FGF23-downregulated genes (Table 4), STAT1 was of greatest interest because it is also known to mediate the intracellular signaling of erythropoietin.20 The other transcription factors with binding sites in FGF23-downregulated genes are not known to act in renal tubule epithelial cells. These results suggest the possibility of cross talk between FGF23 and erythropoietin signaling in renal tubule epithelial cells.
Table 4 Transcription factors putatively involved in the downregulation of genes following FGF23 stimulation
FGF23 modulation of gene expression induced by erythropoietin in renal tubule epithelial cells
As determined by qPCR, the expression of Rgs16 tended to be upregulated following FGF23 stimulation for 2 h but was not significantly upregulated by FGF23 stimulation for 4 h. The expression of Krt17 and Akt1s1 was upregulated by FGF23 stimulation as determined using microarry analysis but not using qPCR. These differences could be attributable to the methods used, with the microarray analysis making a direct comparison, whereas the qPCR made an indirect comparison using a reference gene. The direct comparison is more reliable, according to a previous report.22 Expression of Rgs16, which tended to be upregulated in response to FGF23, was also upregulated following erythropoietin stimulation (Figure 1).
The expression of Ak4, Ankrd37, Mgarp1, Slc16a3 and Tmprss6 was significantly downregulated following FGF23 stimulation for 4 h. The expression of Mt1, Mt2, Pdk1 and Selenbp tended to be downregulated by FGF23 stimulation for 4 h, but these effects were not significant. Expressions of remaining genes, Bnip3, Cadps2, Mt1, and Pygl, were downregulated by FGF23 stimulation for 4 h, as determined using microarray analysis, but not using qPCR. As described above, these differences could be attributable to the use of direct comparisons in the microarray analysis versus the less reliable indirect comparisons by qPCR. Moreover, the expression of Bnip3, Cadps2, Mt2, and Pygl, which were not significantly downregulated by FGF23 stimulation for 4 h, was significantly downregulated following stimulation for 2 h. The expression of Mt1 tended to be downregulated following 2 h FGF23 stimulation. Thus, the downregulation of all genes identified using microarray analysis was confirmed using qPCR for either the 2 h or the 4 h FGF23 stimulation timepoint.
The expression of 10 out of 12 FGF23-downregulated genes was upregulated in response to erythropoietin (Figure 2). According to our bioinformatics analysis, five of the 10 genes, Bnip3, Mt1, Mt2, Pdk1 and Slc16a3, were related to oxidative stress, Cadps2 was related to neurotransmission, Pygl was related to glycogenosis, Selenbp was related to cancer and Tmprss6 was related to androgen signaling. Thus, FGF23 mainly modulated the oxidative stress genes induced by erythropoietin. The effects of erythropoietin on these genes were mediated by STAT1, as shown by the results of an STAT1 knock-down experiment (Figure S2). However, STAT1 phosphorylation was not significantly affected by FGF23 (Figure 3). Expression of the 10 erythropoietin-upregulated genes was suppressed when the cells were stimulated with FGF23 and erythropoietin together (Figure 2). These results indicate that FGF23 modulated the effects of erythropoietin in renal tubule epithelial cells in a STAT1-independent manner and illustrate cross talk between FGF23 and erythropoietin signaling.
ERK mediation of the effects of FGF23 on gene expression induced by erythropoietin
ERK is known to mediate the induction of gene expression by FGF23.15 To investigate whether it also mediates the suppressive effects of FGF23 on the induction of gene by erythropoietin, mIMCD3 cells were costimulated with erythropoietin, FGF23 and an ERK inhibitor. The expression of seven out of 10 erythropoietin-upregulated genes that were suppressed by FGF23, Ankrd37, Mgarp1, Mt1, Mt2, Pygl, Slc16a3 and Selenbp, was significantly recovered following cotreatment with the ERK inhibitor (Figure 4). Taken together, our results indicate that the mechanism by which FGF23 suppresses the induction of gene expression by erythropoietin might involve inhibitory RNAs that are induced through ERK activation by FGF23.
The role of FGF23 has mostly been studied in the field of Ca–P metabolism; however, other biological roles of FGF23 have been reported more recently. Thus, we hypothesized that FGF23 may have biological roles in renal cells other than Ca–P metabolism. To identify new biological roles of FGF23 in renal tubule epithelial cells, we performed an exhaustive gene expression analysis using DNA microarrays and bioinformatics analysis. As a result, PPARγ and STAT3 were identified as candidate transcription factors for mediating the upregulation of genes by FGF23. Conversely, STAT1 was identified as a candidate for mediating the downregulation of genes by FGF23. STAT1 and STAT3 are also known to mediate the intracellular signaling of erythropoietin. Erythropoietin is known to be involved in the restoration of renal function in patients with renal failure, and its receptor is expressed on renal tubule epithelial cells.19 Thus, signaling through STAT1 is important in renal epithelial cell function. These observations suggest that FGF23 and erythropoietin might interact to regulate gene expression in renal tubule epithelial cells.
Indeed, we found that the expression of several genes that were downregulated by FGF23 was upregulated by erythropoietin. Furthermore, inhibition of ERK, which mediates FGF23 signaling, reversed the effects of FGF23 on erythropoietin-induced genes. Thus, FGF23 generally suppressed the biological activity of erythropoietin in renal tubule epithelial cells. Only one gene, Rgs16, was upregulated by both ligands. Therefore, FGF23 may not exclusively suppress gene expression induced by erythropoietin but also stimulate the expression of some erythropoietin-induced genes.
The physiological roles of erythropoietin in renal tubule epithelial cells have been reported to include the suppression of fibrosis, protection against apoptosis,23 prevention of renal injury24 and responses to oxidative stress.25 These effects can act to prevent the injury of renal tubule epithelial cells. In this study, we showed that FGF23 modulated the expression of genes related to oxidative stress, Mt1, Mt2, Ak4, Bnip3 and Pdk1,26–30 which were induced by erythropoietin, but not the expression of genes related to other effects of erythropoietin, such as the suppression of fibrosis or apoptosis and the prevention of ischemic injury. Moreover, expression of the oxidative stress gene, Nrf2,31 which has been reported to have protective effects against renal tubule cell injury, was not suppressed by FGF23. Furthermore, not all genes related to oxidative stress have a protective effect against renal tubule epithelial cell injury, because Nupr1, another gene related to oxidative stress, can act to potentiate the injury of renal tubule epithelial cells.32 In light of these considerations, FGF23 may cooperate with erythropoietin to protect renal tubule epithelial cells against injury by suppressing the expression of oxidative stress genes that would have harmful effects if induced by erythropoietin alone. We aim to test this hypothesis in a future study.
We also found that erythroblasts expressed both EpoR and Klotho (Figure 5). This observation similarly may be attributable to the interaction of erythropoietin and FGF23 in these cells. It may cause the erythropoietin-resistant anemia seen in patients with renal failure, whose serum levels of FGF23 are extremely high.33
According to our Western blot analysis, FGF23 did not influence the STAT1 phosphorylation that was induced by erythropoietin. Thus, FGF23 would not directly affect STAT1 activity. A possible alternative mechanism of FGF23–erythropoietin cross talk involves both signaling pathways acting directly on the promoters of target genes. Recently, there have been reports that nonprotein-coding genes can act as regulatory elements to suppress the expression of protein-coding genes.34,35 In this study, the expression of five nonprotein-coding genes was upregulated by FGF23. Thus, the mechanism of cross talk between FGF23 and erythropoietin might involve these regulatory nonprotein-coding genes. We have not yet clarified which nonprotein-coding genes are involved, but we would like to address this in a future study.
There were some limitations to this study. One is that by changing the criteria for identification of upregulated or downregulated genes, other meaningful genes might be discovered. Another is that the available bioinformatics data are increasing all the time, but we were only able to use the bioinformation accumulated to date. Hence, additional transcription factors may be identifiable in similar studies conducted in the future. Furthermore, the transcription factors identified in this study other than PPARγ, STAT1 and STAT3 may have important biological roles in renal epithelial cells, which should be clarified in future studies. The last is that we examined only one renal tubule epithelial cell line. Thus, different results may be obtained using cell lines other than mIMCD3.
In summary, we attempted to identify new biological roles of FGF23 in renal tubule epithelial cells. Our results raise the possibility of cross talk between FGF23 and erythropoietin signaling. Because FGF23 and erythropoietin play important roles in the pathology of patients with chronic renal failure, elucidation of such cross talk could contribute to a better understanding of this pathological condition.
PVDF, polyvinylidene difluoride
qPCR, quantitative polymerase chain reaction
SD, standard deviation
TBST, Tris-buffered saline (50 mM Tris, 150 mM NaCl, pH 7.6) with 0.05% Tween 20
This work was supported by a Grant in Aid for Scientific Research (KAKENHI) (grant number 16K09651) and Wakayama Kidney Foundation. The authors thank Ms. M Matsudaira and Ms. Y Doi for providing excellent secretarial support. They also thank Edanz Group (www.edanzediting.com/ac) for editing a draft of this manuscript.
The authors report no conflicts of interest in this work.
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