CytokineExplore: An Online Tool for Statistical Analysis of Cytokine Concentration Datasets
Received 2 April 2020
Accepted for publication 17 July 2020
Published 31 July 2020 Volume 2020:13 Pages 401—410
Checked for plagiarism Yes
Review by Single-blind
Peer reviewer comments 2
Editor who approved publication: Dr Ning Quan
Osama Kassem,1 Abdulwahab Al-Saleh,1 Fawaz Azizieh,2 Kamaludin Dingle2
1Department of Computer Science, Gulf University for Science and Technology, Hawally, Kuwait; 2Center for Applied Mathematics and Bioinformatics (CAMBIO), Department of Mathematics and Natural Science, Gulf University for Science and Technology, Hawally, Kuwait
Correspondence: Kamaludin Dingle
Center for Applied Mathematics and Bioinformatics (CAMBIO), Department of Mathematics and Natural Science, Gulf University for Science and Technology, Hawally 32093, Kuwait
Tel +965 2530 7488
Purpose: Cytokine data sets are increasing both in the number of different cytokines measured and the number of samples assayed. Further, typically data from different groups may be contrasted, eg, normal vs complication subjects. Many univariate and multivariate statistical techniques exist to study such cytokine datasets, but the ability to implement these techniques may be lacking for some practitioners, or may not be available quickly and conveniently. Here, we introduce CytokineExplore, an online tool for multi-cytokine and multi-group data analysis of user-provided Microsoft Excel data files.
Materials and Methods: In order to illustrate the tool features, we use data from intrauterine growth retardation (IUGR), a pregnancy complication, and normal healthy subjects as a control. The dataset contains levels for 10 cytokines, namely: IL-4, IL-6, IL-8, IL-10, IL-12, IL-13, IL-18, IL-23, interferon-gamma (IFN-γ) and tumour necrosis-alpha (TNF-α), obtained from 34 women with IUGR (further divided into 17 symmetric and 17 asymmetric cases) and 24 gestationally age-matched normal controls.
Results: The online tool automatically generates box-plots, histograms, PCA and PLSDA plots, t-tests and Mann–Whitney statistical tests, cytokine importance values for separating two groups, heatmaps for comparing multiple groups, and other functionalities. Figures generated can be directly downloaded for use in presentations or journal articles.
Conclusion: The tool facilitates quick and easy numerical exploration and multivariate analysis of cytokine datasets, to aid basic understanding and hypothesis generation.
Keywords: cytokines, data analysis, multivariate statistics, diagnostics, pregnancy complications, intrauterine growth retardation
This work is published and licensed by Dove Medical Press Limited. The full terms of this license are available at https://www.dovepress.com/terms.php and incorporate the Creative Commons Attribution - Non Commercial (unported, v3.0) License. By accessing the work you hereby accept the Terms. Non-commercial uses of the work are permitted without any further permission from Dove Medical Press Limited, provided the work is properly attributed. For permission for commercial use of this work, please see paragraphs 4.2 and 5 of our Terms.Download Article [PDF] View Full Text [HTML][Machine readable]